miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27482 5' -52.5 NC_005869.1 + 26651 0.66 0.747001
Target:  5'- cCUGGA-GUACUgcgCCGGagacggaGCCUGcgUGCg -3'
miRNA:   3'- -GACCUaCAUGA---GGUCg------UGGACuaGCG- -5'
27482 5' -52.5 NC_005869.1 + 10476 0.66 0.717985
Target:  5'- cCUGGA-GUGCuUCCGGCGCggggcccaagccuggCUGAacgagCGCa -3'
miRNA:   3'- -GACCUaCAUG-AGGUCGUG---------------GACUa----GCG- -5'
27482 5' -52.5 NC_005869.1 + 10890 0.66 0.70208
Target:  5'- -gGGAgcgaGUGCUCCAGC-CCgaggacuuUGAggggCGCg -3'
miRNA:   3'- gaCCUa---CAUGAGGUCGuGG--------ACUa---GCG- -5'
27482 5' -52.5 NC_005869.1 + 24344 0.66 0.70208
Target:  5'- -cGGAcGUGCUgCAGCgccACCUGcugCGCc -3'
miRNA:   3'- gaCCUaCAUGAgGUCG---UGGACua-GCG- -5'
27482 5' -52.5 NC_005869.1 + 23867 0.67 0.66754
Target:  5'- cCUGcucGUGgGCUaCCAGCACCUGcugCGCc -3'
miRNA:   3'- -GACc--UACaUGA-GGUCGUGGACua-GCG- -5'
27482 5' -52.5 NC_005869.1 + 20650 0.67 0.63965
Target:  5'- cCUGGGcgcgcGUGCgccaggugaacagCCGGCugCUGAUgGCg -3'
miRNA:   3'- -GACCUa----CAUGa------------GGUCGugGACUAgCG- -5'
27482 5' -52.5 NC_005869.1 + 9676 0.68 0.609391
Target:  5'- -aGGAUgGUACUCUGGCGCagcaGGUgGCg -3'
miRNA:   3'- gaCCUA-CAUGAGGUCGUGga--CUAgCG- -5'
27482 5' -52.5 NC_005869.1 + 30265 0.73 0.346939
Target:  5'- aUGG-UGUucGCUCCAGCGCCgGG-CGCc -3'
miRNA:   3'- gACCuACA--UGAGGUCGUGGaCUaGCG- -5'
27482 5' -52.5 NC_005869.1 + 1594 0.73 0.329645
Target:  5'- -cGGGUGUACUcCCAGCGacaUGAgCGCg -3'
miRNA:   3'- gaCCUACAUGA-GGUCGUgg-ACUaGCG- -5'
27482 5' -52.5 NC_005869.1 + 18065 0.73 0.32124
Target:  5'- cCUGGGgcgcGUGCccagcaCCAGCACCUcGUCGCu -3'
miRNA:   3'- -GACCUa---CAUGa-----GGUCGUGGAcUAGCG- -5'
27482 5' -52.5 NC_005869.1 + 16675 0.77 0.185961
Target:  5'- cCUGGGUGUGCggugggCUAGCACgCUGGUUGg -3'
miRNA:   3'- -GACCUACAUGa-----GGUCGUG-GACUAGCg -5'
27482 5' -52.5 NC_005869.1 + 32477 1.12 0.000589
Target:  5'- cCUGGAUGUACUCCAGCACCUGAUCGCu -3'
miRNA:   3'- -GACCUACAUGAGGUCGUGGACUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.