miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2751 5' -50.1 NC_001491.2 + 140121 0.84 0.288366
Target:  5'- cGGCGGagGCAGCGGACGCGCUCCGGa -3'
miRNA:   3'- -UCGUUaaCGUUGUUUGCGCGGGGUUg -5'
2751 5' -50.1 NC_001491.2 + 33171 0.81 0.402002
Target:  5'- uGCAAUUGCu-CucGCGCGCCCCAAg -3'
miRNA:   3'- uCGUUAACGuuGuuUGCGCGGGGUUg -5'
2751 5' -50.1 NC_001491.2 + 115854 0.8 0.468534
Target:  5'- gGGCAAgaGCGGCAAGCgGCGCUCCGAg -3'
miRNA:   3'- -UCGUUaaCGUUGUUUG-CGCGGGGUUg -5'
2751 5' -50.1 NC_001491.2 + 52320 0.77 0.647886
Target:  5'- cAGCAGagGUGACAGACGUGCCuCCcGCa -3'
miRNA:   3'- -UCGUUaaCGUUGUUUGCGCGG-GGuUG- -5'
2751 5' -50.1 NC_001491.2 + 26911 0.76 0.680308
Target:  5'- aGGCGcgggGCuccauCAAGCGCGCUCCAGCg -3'
miRNA:   3'- -UCGUuaa-CGuu---GUUUGCGCGGGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 42323 0.75 0.753895
Target:  5'- uAGCAug-GCGGCAAGCuuGuCCCCAACg -3'
miRNA:   3'- -UCGUuaaCGUUGUUUGcgC-GGGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 23269 0.75 0.753895
Target:  5'- cGCAAgcgcGCAACGGGCGCGCgCCGc- -3'
miRNA:   3'- uCGUUaa--CGUUGUUUGCGCGgGGUug -5'
2751 5' -50.1 NC_001491.2 + 68691 0.74 0.764013
Target:  5'- cGCGAgUGaAGCGGAUcaGCGCCCCGACa -3'
miRNA:   3'- uCGUUaACgUUGUUUG--CGCGGGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 147581 0.74 0.783841
Target:  5'- uGGCAGUcuccGCGGgGAACGCgccugaauccGCCCCGACg -3'
miRNA:   3'- -UCGUUAa---CGUUgUUUGCG----------CGGGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 47455 0.73 0.81241
Target:  5'- cAGCGuaagGguGCGuuGCGCGCUCCAGCa -3'
miRNA:   3'- -UCGUuaa-CguUGUu-UGCGCGGGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 141550 0.73 0.847885
Target:  5'- gGGCGuucUGCGccccGCcGugGCGCCCCGAUg -3'
miRNA:   3'- -UCGUua-ACGU----UGuUugCGCGGGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 117455 0.73 0.847885
Target:  5'- cGGCAGcaGCAGCAu-CG-GCCCCGGCg -3'
miRNA:   3'- -UCGUUaaCGUUGUuuGCgCGGGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 101845 0.72 0.872213
Target:  5'- cAGCg---GCu-CAAGCGCGCcCCCGGCg -3'
miRNA:   3'- -UCGuuaaCGuuGUUUGCGCG-GGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 142356 0.72 0.872213
Target:  5'- uGGUGAUUGguGCGAACGgGCCUCu-- -3'
miRNA:   3'- -UCGUUAACguUGUUUGCgCGGGGuug -5'
2751 5' -50.1 NC_001491.2 + 68736 0.72 0.872213
Target:  5'- cGCGcgUGCAGCGgagAGCGCcgacgccgccacGCCCCAGg -3'
miRNA:   3'- uCGUuaACGUUGU---UUGCG------------CGGGGUUg -5'
2751 5' -50.1 NC_001491.2 + 14984 0.72 0.879847
Target:  5'- uAGCAagcGUUGCGGCGguuuGACGCaCCCCcACg -3'
miRNA:   3'- -UCGU---UAACGUUGU----UUGCGcGGGGuUG- -5'
2751 5' -50.1 NC_001491.2 + 4163 0.71 0.894367
Target:  5'- gAGCAugcUGCGaucuGCAAACGCGCCUacACg -3'
miRNA:   3'- -UCGUua-ACGU----UGUUUGCGCGGGguUG- -5'
2751 5' -50.1 NC_001491.2 + 95739 0.71 0.901243
Target:  5'- cAGCucGUUGUgaauaAGCucucuGACGCGCCCCAGa -3'
miRNA:   3'- -UCGu-UAACG-----UUGu----UUGCGCGGGGUUg -5'
2751 5' -50.1 NC_001491.2 + 66919 0.71 0.920288
Target:  5'- uGCGGUUuuaGCcACGGcuGCGgGCCCCGACu -3'
miRNA:   3'- uCGUUAA---CGuUGUU--UGCgCGGGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 125587 0.7 0.93379
Target:  5'- cGCGGcgGCGGCcGucggaggggggggauGCGCGCCCCGAg -3'
miRNA:   3'- uCGUUaaCGUUGuU---------------UGCGCGGGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.