miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2751 5' -50.1 NC_001491.2 + 2583 0.69 0.959346
Target:  5'- cAGCuGUUuaaaaagaaGCGcCAGACGCGCCCCu-- -3'
miRNA:   3'- -UCGuUAA---------CGUuGUUUGCGCGGGGuug -5'
2751 5' -50.1 NC_001491.2 + 4163 0.71 0.894367
Target:  5'- gAGCAugcUGCGaucuGCAAACGCGCCUacACg -3'
miRNA:   3'- -UCGUua-ACGU----UGUUUGCGCGGGguUG- -5'
2751 5' -50.1 NC_001491.2 + 5388 0.66 0.992097
Target:  5'- uAGCGGaUGUcuGCAGGCGCGUaaCCAGCu -3'
miRNA:   3'- -UCGUUaACGu-UGUUUGCGCGg-GGUUG- -5'
2751 5' -50.1 NC_001491.2 + 8632 0.66 0.990903
Target:  5'- uGGCAuggcGCGACcuccagcuAACGCGCacgaCCAGCg -3'
miRNA:   3'- -UCGUuaa-CGUUGu-------UUGCGCGg---GGUUG- -5'
2751 5' -50.1 NC_001491.2 + 14984 0.72 0.879847
Target:  5'- uAGCAagcGUUGCGGCGguuuGACGCaCCCCcACg -3'
miRNA:   3'- -UCGU---UAACGUUGU----UUGCGcGGGGuUG- -5'
2751 5' -50.1 NC_001491.2 + 23269 0.75 0.753895
Target:  5'- cGCAAgcgcGCAACGGGCGCGCgCCGc- -3'
miRNA:   3'- uCGUUaa--CGUUGUUUGCGCGgGGUug -5'
2751 5' -50.1 NC_001491.2 + 26911 0.76 0.680308
Target:  5'- aGGCGcgggGCuccauCAAGCGCGCUCCAGCg -3'
miRNA:   3'- -UCGUuaa-CGuu---GUUUGCGCGGGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 33171 0.81 0.402002
Target:  5'- uGCAAUUGCu-CucGCGCGCCCCAAg -3'
miRNA:   3'- uCGUUAACGuuGuuUGCGCGGGGUUg -5'
2751 5' -50.1 NC_001491.2 + 34419 0.68 0.978135
Target:  5'- cGGCcGUcGCAuggGCAGAgaGCGCCCCGGa -3'
miRNA:   3'- -UCGuUAaCGU---UGUUUg-CGCGGGGUUg -5'
2751 5' -50.1 NC_001491.2 + 34493 0.68 0.9805
Target:  5'- uGGCG--UGCucggcCAcGCGCGCCCUGGCc -3'
miRNA:   3'- -UCGUuaACGuu---GUuUGCGCGGGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 34820 0.67 0.989571
Target:  5'- gGGCAGacaGCAGCucguuguacACGgGCUCCAGCg -3'
miRNA:   3'- -UCGUUaa-CGUUGuu-------UGCgCGGGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 42323 0.75 0.753895
Target:  5'- uAGCAug-GCGGCAAGCuuGuCCCCAACg -3'
miRNA:   3'- -UCGUuaaCGUUGUUUGcgC-GGGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 47393 0.66 0.993163
Target:  5'- cAGCAg--GCGcCGGugGCGUucaaCCCAGCg -3'
miRNA:   3'- -UCGUuaaCGUuGUUugCGCG----GGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 47455 0.73 0.81241
Target:  5'- cAGCGuaagGguGCGuuGCGCGCUCCAGCa -3'
miRNA:   3'- -UCGUuaa-CguUGUu-UGCGCGGGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 47535 0.7 0.946677
Target:  5'- cGCAAUaGCGACAAagGgGCGCCUCuuCu -3'
miRNA:   3'- uCGUUAaCGUUGUU--UgCGCGGGGuuG- -5'
2751 5' -50.1 NC_001491.2 + 48836 0.69 0.966537
Target:  5'- aAGCGGUaUGCAACAAGCacgcucGCGCCa-GGCg -3'
miRNA:   3'- -UCGUUA-ACGUUGUUUG------CGCGGggUUG- -5'
2751 5' -50.1 NC_001491.2 + 52320 0.77 0.647886
Target:  5'- cAGCAGagGUGACAGACGUGCCuCCcGCa -3'
miRNA:   3'- -UCGUUaaCGUUGUUUGCGCGG-GGuUG- -5'
2751 5' -50.1 NC_001491.2 + 57698 0.66 0.990776
Target:  5'- gAGCAcuggcugaaacugGUUGCGAaaguUGCGCCCCuccACa -3'
miRNA:   3'- -UCGU-------------UAACGUUguuuGCGCGGGGu--UG- -5'
2751 5' -50.1 NC_001491.2 + 64970 0.69 0.959346
Target:  5'- cGGCAGgcGCGACAGuUGuCGUCUCGACa -3'
miRNA:   3'- -UCGUUaaCGUUGUUuGC-GCGGGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 65848 0.68 0.9805
Target:  5'- cGGCGAUaUGCAcGCAAGCGCcGCCaUGACu -3'
miRNA:   3'- -UCGUUA-ACGU-UGUUUGCG-CGGgGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.