Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27514 | 5' | -50.4 | NC_005879.1 | + | 14657 | 1 | 0.009454 |
Target: 5'- gUCAAUGGUaCGGUCGACCUCAACACCa -3' miRNA: 3'- -AGUUACCAcGUCAGCUGGAGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 21867 | 0.82 | 0.142266 |
Target: 5'- aUAAUGGgcgGguGUCGACgUCGACACCc -3' miRNA: 3'- aGUUACCa--CguCAGCUGgAGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 37979 | 0.79 | 0.218533 |
Target: 5'- uUCGG-GGUGU-GUCGACCgUCGACACCa -3' miRNA: 3'- -AGUUaCCACGuCAGCUGG-AGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 24439 | 0.76 | 0.353146 |
Target: 5'- gUCAugcuUGGUGCAGguagCGuCUUCAGCAUCa -3' miRNA: 3'- -AGUu---ACCACGUCa---GCuGGAGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 16833 | 0.74 | 0.470933 |
Target: 5'- ----gGGgagGguGUCGACgUCGACACCc -3' miRNA: 3'- aguuaCCa--CguCAGCUGgAGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 16899 | 0.74 | 0.470933 |
Target: 5'- ----cGGgGguGUCGACgUCGACACCc -3' miRNA: 3'- aguuaCCaCguCAGCUGgAGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 21789 | 0.73 | 0.503406 |
Target: 5'- gCGGUGaGauagGguGUCGACgUCGACACCc -3' miRNA: 3'- aGUUAC-Ca---CguCAGCUGgAGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 34821 | 0.72 | 0.536814 |
Target: 5'- -aGAUGG-GU-GUCGACgUCGACACCc -3' miRNA: 3'- agUUACCaCGuCAGCUGgAGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 5362 | 0.72 | 0.570958 |
Target: 5'- -aGAUGGgucaGCAgGUCGGCC-CAAUGCCg -3' miRNA: 3'- agUUACCa---CGU-CAGCUGGaGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 36285 | 0.71 | 0.605602 |
Target: 5'- gCAAaGGcGguGUCGACgUCGACACa -3' miRNA: 3'- aGUUaCCaCguCAGCUGgAGUUGUGg -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 29743 | 0.7 | 0.652094 |
Target: 5'- uUCGAUGGcuaagucGCAaaucaaaguGUCGaaacGCCUCAACACCc -3' miRNA: 3'- -AGUUACCa------CGU---------CAGC----UGGAGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 36213 | 0.7 | 0.663695 |
Target: 5'- cUCGGcaGUGU-GUCGACgUCGACACCg -3' miRNA: 3'- -AGUUacCACGuCAGCUGgAGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 24627 | 0.69 | 0.732162 |
Target: 5'- --uGUGG-GU-GUCGACgUCGACACCc -3' miRNA: 3'- aguUACCaCGuCAGCUGgAGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 38048 | 0.69 | 0.732162 |
Target: 5'- aCAAUGGUGUcgacGGUCGAC----ACACCc -3' miRNA: 3'- aGUUACCACG----UCAGCUGgaguUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 14590 | 0.69 | 0.743259 |
Target: 5'- ---uUGGUGUugaGGUCGACCguaccaUUGACGCCc -3' miRNA: 3'- aguuACCACG---UCAGCUGG------AGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 34751 | 0.69 | 0.743259 |
Target: 5'- cUUAAguagGguGUCGACgUCGACACCc -3' miRNA: 3'- -AGUUaccaCguCAGCUGgAGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 4617 | 0.68 | 0.786259 |
Target: 5'- gCAGUGGUGguGgccauagCGGCUUUgAugGCCg -3' miRNA: 3'- aGUUACCACguCa------GCUGGAG-UugUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 24698 | 0.68 | 0.806738 |
Target: 5'- ----cGGaagaauagGguGUCGACgUCGACACCc -3' miRNA: 3'- aguuaCCa-------CguCAGCUGgAGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 29398 | 0.68 | 0.806738 |
Target: 5'- aCAAcccuagGguGUCGACgUCGACACCc -3' miRNA: 3'- aGUUacca--CguCAGCUGgAGUUGUGG- -5' |
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27514 | 5' | -50.4 | NC_005879.1 | + | 33291 | 0.67 | 0.816678 |
Target: 5'- -uGAUGG-GU-GUCGACgUCGACACa -3' miRNA: 3'- agUUACCaCGuCAGCUGgAGUUGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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