miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27553 3' -57.6 NC_005881.1 + 206929 0.68 0.804408
Target:  5'- aCCUCUGCaaaacuuaaaCUCCUCCCACCAcuuaaugCGgCa -3'
miRNA:   3'- aGGAGGUG----------GAGGAGGGUGGUua-----GCgG- -5'
27553 3' -57.6 NC_005881.1 + 184847 0.68 0.804408
Target:  5'- aCCUCUGCaaaacuuaaaCUCCUCCCACCAcuuaaugCGgCa -3'
miRNA:   3'- aGGAGGUG----------GAGGAGGGUGGUua-----GCgG- -5'
27553 3' -57.6 NC_005881.1 + 73681 0.69 0.778099
Target:  5'- aUCUUCCAa-UCCUUCC-CCAAUUGUCu -3'
miRNA:   3'- -AGGAGGUggAGGAGGGuGGUUAGCGG- -5'
27553 3' -57.6 NC_005881.1 + 200693 0.69 0.750696
Target:  5'- gUCUUCCAUCUCCUgCCuuaugCAAUUGUCa -3'
miRNA:   3'- -AGGAGGUGGAGGAgGGug---GUUAGCGG- -5'
27553 3' -57.6 NC_005881.1 + 191083 0.69 0.750696
Target:  5'- gUCUUCCAUCUCCUgCCuuaugCAAUUGUCa -3'
miRNA:   3'- -AGGAGGUGGAGGAgGGug---GUUAGCGG- -5'
27553 3' -57.6 NC_005881.1 + 206071 0.7 0.72242
Target:  5'- aCC-CCACCUCCUCCgAU---UCGUCa -3'
miRNA:   3'- aGGaGGUGGAGGAGGgUGguuAGCGG- -5'
27553 3' -57.6 NC_005881.1 + 185705 0.7 0.72242
Target:  5'- aCC-CCACCUCCUCCgAU---UCGUCa -3'
miRNA:   3'- aGGaGGUGGAGGAGGgUGguuAGCGG- -5'
27553 3' -57.6 NC_005881.1 + 198638 0.7 0.703195
Target:  5'- aCCUCCuACCgcaagaCCUa-CACCAAUCGCUa -3'
miRNA:   3'- aGGAGG-UGGa-----GGAggGUGGUUAGCGG- -5'
27553 3' -57.6 NC_005881.1 + 193138 0.7 0.703195
Target:  5'- aCCUCCuACCgcaagaCCUa-CACCAAUCGCUa -3'
miRNA:   3'- aGGAGG-UGGa-----GGAggGUGGUUAGCGG- -5'
27553 3' -57.6 NC_005881.1 + 204888 0.71 0.67396
Target:  5'- aCCUCCccccCCUCCUCCuCAUUAAgacaUGCCg -3'
miRNA:   3'- aGGAGGu---GGAGGAGG-GUGGUUa---GCGG- -5'
27553 3' -57.6 NC_005881.1 + 186888 0.71 0.67396
Target:  5'- aCCUCCccccCCUCCUCCuCAUUAAgacaUGCCg -3'
miRNA:   3'- aGGAGGu---GGAGGAGG-GUGGUUa---GCGG- -5'
27553 3' -57.6 NC_005881.1 + 923 0.73 0.556121
Target:  5'- aUCCUCCACCgauUCCUCugCCAUCGuuacUCGCUc -3'
miRNA:   3'- -AGGAGGUGG---AGGAG--GGUGGUu---AGCGG- -5'
27553 3' -57.6 NC_005881.1 + 182114 0.73 0.556121
Target:  5'- aUCCUCCACCgauUCCUCugCCAUCGuuacUCGCUc -3'
miRNA:   3'- -AGGAGGUGG---AGGAG--GGUGGUu---AGCGG- -5'
27553 3' -57.6 NC_005881.1 + 158188 0.74 0.517872
Target:  5'- gUCCUCaauaaCACCUCCUCUCAUCGGU-GCUg -3'
miRNA:   3'- -AGGAG-----GUGGAGGAGGGUGGUUAgCGG- -5'
27553 3' -57.6 NC_005881.1 + 183009 0.76 0.402325
Target:  5'- aUCCUCCccACCUCCUCCCccuCCucucuucCGCCc -3'
miRNA:   3'- -AGGAGG--UGGAGGAGGGu--GGuua----GCGG- -5'
27553 3' -57.6 NC_005881.1 + 27 0.76 0.402325
Target:  5'- aUCCUCCccACCUCCUCCCccuCCucucuucCGCCc -3'
miRNA:   3'- -AGGAGG--UGGAGGAGGGu--GGuua----GCGG- -5'
27553 3' -57.6 NC_005881.1 + 124454 0.77 0.339842
Target:  5'- gUCCUCCACCUCC-CCCACCu----CCu -3'
miRNA:   3'- -AGGAGGUGGAGGaGGGUGGuuagcGG- -5'
27553 3' -57.6 NC_005881.1 + 182254 0.8 0.248157
Target:  5'- cUCUUCCGCCgCCUCUCGCCAAUgCGUCc -3'
miRNA:   3'- -AGGAGGUGGaGGAGGGUGGUUA-GCGG- -5'
27553 3' -57.6 NC_005881.1 + 783 0.8 0.248157
Target:  5'- cUCUUCCGCCgCCUCUCGCCAAUgCGUCc -3'
miRNA:   3'- -AGGAGGUGGaGGAGGGUGGUUA-GCGG- -5'
27553 3' -57.6 NC_005881.1 + 204176 1.12 0.001837
Target:  5'- cUCCUCCACCUCCUCCCACCAAUCGCCg -3'
miRNA:   3'- -AGGAGGUGGAGGAGGGUGGUUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.