Results 1 - 20 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27557 | 3' | -53 | NC_005882.1 | + | 2124 | 1.13 | 0.000578 |
Target: 5'- gCUGCGCCGAUUGGACAUCACCGAUCCg -3' miRNA: 3'- -GACGCGGCUAACCUGUAGUGGCUAGG- -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 5654 | 0.73 | 0.325998 |
Target: 5'- uUGCGCgucaUGGACGccguguUCGCCGAUCCg -3' miRNA: 3'- gACGCGgcuaACCUGU------AGUGGCUAGG- -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 15807 | 0.71 | 0.426089 |
Target: 5'- -gGCGCCGccgcGACuugcgGUCACCGGUCCc -3' miRNA: 3'- gaCGCGGCuaacCUG-----UAGUGGCUAGG- -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 21766 | 0.71 | 0.436059 |
Target: 5'- -cGC-CCGGcucGGGCGUCGCCGggCCg -3' miRNA: 3'- gaCGcGGCUaa-CCUGUAGUGGCuaGG- -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 3630 | 0.71 | 0.446163 |
Target: 5'- uUGCGUCGAUc--ACGUCGCCGA-CCg -3' miRNA: 3'- gACGCGGCUAaccUGUAGUGGCUaGG- -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 12346 | 0.71 | 0.466753 |
Target: 5'- -gGCGCCGAUcGG-CAaCGCUGGUUCg -3' miRNA: 3'- gaCGCGGCUAaCCuGUaGUGGCUAGG- -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 19875 | 0.7 | 0.520233 |
Target: 5'- -cGCGCCGAgcUGGACG--GCCGcAUUCg -3' miRNA: 3'- gaCGCGGCUa-ACCUGUagUGGC-UAGG- -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 13596 | 0.69 | 0.564672 |
Target: 5'- gUGCGCaagGAacUGGACuaccUCGCCGAUCg -3' miRNA: 3'- gACGCGg--CUa-ACCUGu---AGUGGCUAGg -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 25718 | 0.69 | 0.587277 |
Target: 5'- -aGCGCCGAUUacGGGCGcgGCCGuggcagCCg -3' miRNA: 3'- gaCGCGGCUAA--CCUGUagUGGCua----GG- -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 29593 | 0.68 | 0.610043 |
Target: 5'- -cGCGCuUGAacugcUGGACcgCGuCCGAUCCu -3' miRNA: 3'- gaCGCG-GCUa----ACCUGuaGU-GGCUAGG- -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 28672 | 0.68 | 0.610043 |
Target: 5'- uUGCGCCGGUaau-CGUC-CCGAUCg -3' miRNA: 3'- gACGCGGCUAaccuGUAGuGGCUAGg -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 20008 | 0.68 | 0.621463 |
Target: 5'- uUGCGCCGGUUauuaacGGA--UCACCGcGUUCg -3' miRNA: 3'- gACGCGGCUAA------CCUguAGUGGC-UAGG- -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 3252 | 0.68 | 0.632892 |
Target: 5'- -cGgGCCGAUcUGGAuCGUCgGCCGG-CCg -3' miRNA: 3'- gaCgCGGCUA-ACCU-GUAG-UGGCUaGG- -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 8238 | 0.68 | 0.644321 |
Target: 5'- -aGCGCCGGUcGGcugAUCAUCGAcaUCCc -3' miRNA: 3'- gaCGCGGCUAaCCug-UAGUGGCU--AGG- -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 12609 | 0.67 | 0.667131 |
Target: 5'- gUGCGCCGAUcgccGCAgCGCCGG-CCg -3' miRNA: 3'- gACGCGGCUAacc-UGUaGUGGCUaGG- -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 28629 | 0.67 | 0.667131 |
Target: 5'- uUGCGCCGAUcGGACcgCAUCc---- -3' miRNA: 3'- gACGCGGCUAaCCUGuaGUGGcuagg -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 21303 | 0.67 | 0.678489 |
Target: 5'- aUGCGCCGGUUGccuucggaauGGCuUgGCCGG-CCg -3' miRNA: 3'- gACGCGGCUAAC----------CUGuAgUGGCUaGG- -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 11900 | 0.67 | 0.689799 |
Target: 5'- -cGaCGCCGA--GGACgAUCACCGcgCg -3' miRNA: 3'- gaC-GCGGCUaaCCUG-UAGUGGCuaGg -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 22696 | 0.67 | 0.699927 |
Target: 5'- aCUGCGCCGcgUcgacgucGGACAgcgacugCACCGGc-- -3' miRNA: 3'- -GACGCGGCuaA-------CCUGUa------GUGGCUagg -5' |
|||||||
27557 | 3' | -53 | NC_005882.1 | + | 25827 | 0.67 | 0.70105 |
Target: 5'- -aGgGCCGcacGGcGCAucgucUCGCCGAUCCg -3' miRNA: 3'- gaCgCGGCuaaCC-UGU-----AGUGGCUAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home