Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27557 | 3' | -53 | NC_005882.1 | + | 5654 | 0.73 | 0.325998 |
Target: 5'- uUGCGCgucaUGGACGccguguUCGCCGAUCCg -3' miRNA: 3'- gACGCGgcuaACCUGU------AGUGGCUAGG- -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 18593 | 0.66 | 0.766587 |
Target: 5'- cCUGCGCCacuuGA-UGGACG-CAgCGAaCCg -3' miRNA: 3'- -GACGCGG----CUaACCUGUaGUgGCUaGG- -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 18968 | 0.66 | 0.766587 |
Target: 5'- -aGCGCCGAU----CGUCAUCGGccaUCCg -3' miRNA: 3'- gaCGCGGCUAaccuGUAGUGGCU---AGG- -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 14371 | 0.66 | 0.734316 |
Target: 5'- gUGCGCCGAc---ACGUCGCCcGUCa -3' miRNA: 3'- gACGCGGCUaaccUGUAGUGGcUAGg -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 9939 | 0.66 | 0.734316 |
Target: 5'- -cGgGCCGuAUUGGcUcgCGCCGGUgCCa -3' miRNA: 3'- gaCgCGGC-UAACCuGuaGUGGCUA-GG- -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 14532 | 0.66 | 0.722216 |
Target: 5'- aCUGCGCCGAcUGGGCcaaGUUcuacagccucgcgGCCGAc-- -3' miRNA: 3'- -GACGCGGCUaACCUG---UAG-------------UGGCUagg -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 23549 | 0.66 | 0.716676 |
Target: 5'- cCUGCGCCug-UGGggcaaccgcacggcgGCAUgGCCGA-CCg -3' miRNA: 3'- -GACGCGGcuaACC---------------UGUAgUGGCUaGG- -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 3252 | 0.68 | 0.632892 |
Target: 5'- -cGgGCCGAUcUGGAuCGUCgGCCGG-CCg -3' miRNA: 3'- gaCgCGGCUA-ACCU-GUAG-UGGCUaGG- -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 13596 | 0.69 | 0.564672 |
Target: 5'- gUGCGCaagGAacUGGACuaccUCGCCGAUCg -3' miRNA: 3'- gACGCGg--CUa-ACCUGu---AGUGGCUAGg -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 19875 | 0.7 | 0.520233 |
Target: 5'- -cGCGCCGAgcUGGACG--GCCGcAUUCg -3' miRNA: 3'- gaCGCGGCUa-ACCUGUagUGGC-UAGG- -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 12346 | 0.71 | 0.466753 |
Target: 5'- -gGCGCCGAUcGG-CAaCGCUGGUUCg -3' miRNA: 3'- gaCGCGGCUAaCCuGUaGUGGCUAGG- -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 3630 | 0.71 | 0.446163 |
Target: 5'- uUGCGUCGAUc--ACGUCGCCGA-CCg -3' miRNA: 3'- gACGCGGCUAaccUGUAGUGGCUaGG- -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 8238 | 0.68 | 0.644321 |
Target: 5'- -aGCGCCGGUcGGcugAUCAUCGAcaUCCc -3' miRNA: 3'- gaCGCGGCUAaCCug-UAGUGGCU--AGG- -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 20008 | 0.68 | 0.621463 |
Target: 5'- uUGCGCCGGUUauuaacGGA--UCACCGcGUUCg -3' miRNA: 3'- gACGCGGCUAA------CCUguAGUGGC-UAGG- -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 28672 | 0.68 | 0.610043 |
Target: 5'- uUGCGCCGGUaau-CGUC-CCGAUCg -3' miRNA: 3'- gACGCGGCUAaccuGUAGuGGCUAGg -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 29593 | 0.68 | 0.610043 |
Target: 5'- -cGCGCuUGAacugcUGGACcgCGuCCGAUCCu -3' miRNA: 3'- gaCGCG-GCUa----ACCUGuaGU-GGCUAGG- -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 25718 | 0.69 | 0.587277 |
Target: 5'- -aGCGCCGAUUacGGGCGcgGCCGuggcagCCg -3' miRNA: 3'- gaCGCGGCUAA--CCUGUagUGGCua----GG- -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 21766 | 0.71 | 0.436059 |
Target: 5'- -cGC-CCGGcucGGGCGUCGCCGggCCg -3' miRNA: 3'- gaCGcGGCUaa-CCUGUAGUGGCuaGG- -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 15807 | 0.71 | 0.426089 |
Target: 5'- -gGCGCCGccgcGACuugcgGUCACCGGUCCc -3' miRNA: 3'- gaCGCGGCuaacCUG-----UAGUGGCUAGG- -5' |
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27557 | 3' | -53 | NC_005882.1 | + | 933 | 0.66 | 0.765531 |
Target: 5'- gCUG-GCgGAUcgGGGCGUCgugcaaaACCGGUCUg -3' miRNA: 3'- -GACgCGgCUAa-CCUGUAG-------UGGCUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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