miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27559 3' -56.7 NC_005882.1 + 25522 0.66 0.542134
Target:  5'- aUCGGAUgcgcaaCGGCCCGcGCCaUCGCGu-- -3'
miRNA:   3'- aGGUCUA------GCCGGGCaUGG-AGCGCuuc -5'
27559 3' -56.7 NC_005882.1 + 29167 0.66 0.520589
Target:  5'- --aAGAUCGGCuacgccggcgcgCCGUugCUCGCGu-- -3'
miRNA:   3'- aggUCUAGCCG------------GGCAugGAGCGCuuc -5'
27559 3' -56.7 NC_005882.1 + 9816 0.66 0.517386
Target:  5'- cUCCAGuUCGGCCCGaaggaGCCcgaagaagucgaguUCGUGAc- -3'
miRNA:   3'- -AGGUCuAGCCGGGCa----UGG--------------AGCGCUuc -5'
27559 3' -56.7 NC_005882.1 + 22543 0.67 0.478578
Target:  5'- aCCGGcucgCGGCCCGU-CaaggUCGUGAAGu -3'
miRNA:   3'- aGGUCua--GCCGGGCAuGg---AGCGCUUC- -5'
27559 3' -56.7 NC_005882.1 + 16512 0.67 0.478578
Target:  5'- aCCAGcAUCGGCgaaCCGUACUUCucgGUGAAc -3'
miRNA:   3'- aGGUC-UAGCCG---GGCAUGGAG---CGCUUc -5'
27559 3' -56.7 NC_005882.1 + 7767 0.67 0.468334
Target:  5'- -aCGGAUgCGGCCCGUuucgggaauacGCUcCGCGAAc -3'
miRNA:   3'- agGUCUA-GCCGGGCA-----------UGGaGCGCUUc -5'
27559 3' -56.7 NC_005882.1 + 22873 0.67 0.445212
Target:  5'- gCCGGAUgcgcgaguuuugcaCGGCCCGUugC-CGCGu-- -3'
miRNA:   3'- aGGUCUA--------------GCCGGGCAugGaGCGCuuc -5'
27559 3' -56.7 NC_005882.1 + 28387 0.69 0.346806
Target:  5'- cCCAGGUCacuGCCugcugaauCGUGCCUCGCGcGGu -3'
miRNA:   3'- aGGUCUAGc--CGG--------GCAUGGAGCGCuUC- -5'
27559 3' -56.7 NC_005882.1 + 30271 0.7 0.330225
Target:  5'- gCCgAGGUCGGUcagCCGUACgCgCGCGAAGc -3'
miRNA:   3'- aGG-UCUAGCCG---GGCAUG-GaGCGCUUC- -5'
27559 3' -56.7 NC_005882.1 + 15976 0.7 0.322156
Target:  5'- gUCCGGAuUCGGCagguaCaUGCCgagCGCGAAGa -3'
miRNA:   3'- -AGGUCU-AGCCGg----GcAUGGa--GCGCUUC- -5'
27559 3' -56.7 NC_005882.1 + 3302 1.09 0.000492
Target:  5'- aUCCAGAUCGGCCCGUACCUCGCGAAGu -3'
miRNA:   3'- -AGGUCUAGCCGGGCAUGGAGCGCUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.