miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27562 5' -59.3 NC_005882.1 + 11845 0.66 0.440448
Target:  5'- gUAGcCCUUGGCGACUcgauagUCGGCUU-CGGGc -3'
miRNA:   3'- -GUC-GGAGCUGCUGG------AGCUGGAcGCCC- -5'
27562 5' -59.3 NC_005882.1 + 18403 0.66 0.440448
Target:  5'- cCGGCCUUG-CGACgCgacgCGGCC-GCGGu -3'
miRNA:   3'- -GUCGGAGCuGCUG-Ga---GCUGGaCGCCc -5'
27562 5' -59.3 NC_005882.1 + 16105 0.66 0.440448
Target:  5'- -cGUCUUcGCgGACCUCGACCUGUcucGGa -3'
miRNA:   3'- guCGGAGcUG-CUGGAGCUGGACG---CCc -5'
27562 5' -59.3 NC_005882.1 + 14955 0.66 0.440448
Target:  5'- aAGCCUgGACGGCCgaggUGaaGCCaaGUGGGu -3'
miRNA:   3'- gUCGGAgCUGCUGGa---GC--UGGa-CGCCC- -5'
27562 5' -59.3 NC_005882.1 + 11668 0.66 0.434695
Target:  5'- uCAGCCUCG-CGGCCgUCgucgcguacuggcucGAUC-GCGGGc -3'
miRNA:   3'- -GUCGGAGCuGCUGG-AG---------------CUGGaCGCCC- -5'
27562 5' -59.3 NC_005882.1 + 2191 0.66 0.421441
Target:  5'- aGGCaCUCGuCGAUCaUCGACUUcGCGGc -3'
miRNA:   3'- gUCG-GAGCuGCUGG-AGCUGGA-CGCCc -5'
27562 5' -59.3 NC_005882.1 + 6632 0.66 0.412125
Target:  5'- cCAGCUUCGaaGCGAgUUCGGCgucaaggccgCUGCGGa -3'
miRNA:   3'- -GUCGGAGC--UGCUgGAGCUG----------GACGCCc -5'
27562 5' -59.3 NC_005882.1 + 24526 0.66 0.402026
Target:  5'- gGGCCaaGACGACaaCGACUgcgcaggUGUGGGg -3'
miRNA:   3'- gUCGGagCUGCUGgaGCUGG-------ACGCCC- -5'
27562 5' -59.3 NC_005882.1 + 32181 0.67 0.342388
Target:  5'- gGGCgUguACGACgUUGACCUGcCGGGa -3'
miRNA:   3'- gUCGgAgcUGCUGgAGCUGGAC-GCCC- -5'
27562 5' -59.3 NC_005882.1 + 33068 0.67 0.342388
Target:  5'- aAGCC-CGgucuGCGACugCUCGACCUGCGc- -3'
miRNA:   3'- gUCGGaGC----UGCUG--GAGCUGGACGCcc -5'
27562 5' -59.3 NC_005882.1 + 29226 0.68 0.334293
Target:  5'- uGGCUUCGACGaaccGCCgUCGACCgugacaauccGCGGa -3'
miRNA:   3'- gUCGGAGCUGC----UGG-AGCUGGa---------CGCCc -5'
27562 5' -59.3 NC_005882.1 + 22834 0.68 0.334293
Target:  5'- cCGGCCgCGGCGaAUCUCGugCUGaagaacgacuCGGGc -3'
miRNA:   3'- -GUCGGaGCUGC-UGGAGCugGAC----------GCCC- -5'
27562 5' -59.3 NC_005882.1 + 3561 0.68 0.318525
Target:  5'- aCGGCCgCGAUGaAUCUCG-CC-GCGGGc -3'
miRNA:   3'- -GUCGGaGCUGC-UGGAGCuGGaCGCCC- -5'
27562 5' -59.3 NC_005882.1 + 7762 0.68 0.310853
Target:  5'- gUAGCCUCGACGccgcccgcgagcGCCUCGACa-GCa-- -3'
miRNA:   3'- -GUCGGAGCUGC------------UGGAGCUGgaCGccc -5'
27562 5' -59.3 NC_005882.1 + 14283 0.68 0.295933
Target:  5'- -uGCuCUUGACGACCUugucgaCGGCCgcgGCGGc -3'
miRNA:   3'- guCG-GAGCUGCUGGA------GCUGGa--CGCCc -5'
27562 5' -59.3 NC_005882.1 + 22036 0.69 0.291567
Target:  5'- -uGCCaUCGACGugCUCGAucacguucgcaccgcCCUGgUGGGc -3'
miRNA:   3'- guCGG-AGCUGCugGAGCU---------------GGAC-GCCC- -5'
27562 5' -59.3 NC_005882.1 + 208 0.69 0.281576
Target:  5'- gAGCCUUGccuuCGGCCUgacgCGGCCcucGCGGGc -3'
miRNA:   3'- gUCGGAGCu---GCUGGA----GCUGGa--CGCCC- -5'
27562 5' -59.3 NC_005882.1 + 15569 0.69 0.261084
Target:  5'- aCGGCCUcccgaaggaugcCGACGugCUCGcggACCUGCGc- -3'
miRNA:   3'- -GUCGGA------------GCUGCugGAGC---UGGACGCcc -5'
27562 5' -59.3 NC_005882.1 + 19141 0.69 0.254529
Target:  5'- cCGGCgC-CGACGAgUUCGGCgaaUGCGGGa -3'
miRNA:   3'- -GUCG-GaGCUGCUgGAGCUGg--ACGCCC- -5'
27562 5' -59.3 NC_005882.1 + 16041 0.7 0.248109
Target:  5'- aAGCgCUCGAauggGGCCUCGACC-GUGGc -3'
miRNA:   3'- gUCG-GAGCUg---CUGGAGCUGGaCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.