Results 1 - 20 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 4582 | 1.1 | 0.000247 |
Target: 5'- gCAGCCUCGACGACCUCGACCUGCGGGa -3' miRNA: 3'- -GUCGGAGCUGCUGGAGCUGGACGCCC- -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 21288 | 0.74 | 0.116977 |
Target: 5'- gCGGCgaCGGCGGCCggCGAcgucauccgcauCCUGCGGGg -3' miRNA: 3'- -GUCGgaGCUGCUGGa-GCU------------GGACGCCC- -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 4827 | 0.73 | 0.149913 |
Target: 5'- gCAGCUUCGacaGCGGCCUUGAUCUGCu-- -3' miRNA: 3'- -GUCGGAGC---UGCUGGAGCUGGACGccc -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 28450 | 0.72 | 0.176353 |
Target: 5'- uCAGCUUCugGACGACCUUGACC-GCGu- -3' miRNA: 3'- -GUCGGAG--CUGCUGGAGCUGGaCGCcc -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 5558 | 0.71 | 0.212368 |
Target: 5'- aCAGCCUCGACGAgCUgaaCGcGCUUGCGa- -3' miRNA: 3'- -GUCGGAGCUGCUgGA---GC-UGGACGCcc -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 22968 | 0.7 | 0.218001 |
Target: 5'- gCGGCCaaGGCGACCUaCGACUacGCGGa -3' miRNA: 3'- -GUCGGagCUGCUGGA-GCUGGa-CGCCc -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 16041 | 0.7 | 0.248109 |
Target: 5'- aAGCgCUCGAauggGGCCUCGACC-GUGGc -3' miRNA: 3'- gUCG-GAGCUg---CUGGAGCUGGaCGCCc -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 19141 | 0.69 | 0.254529 |
Target: 5'- cCGGCgC-CGACGAgUUCGGCgaaUGCGGGa -3' miRNA: 3'- -GUCG-GaGCUGCUgGAGCUGg--ACGCCC- -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 15569 | 0.69 | 0.261084 |
Target: 5'- aCGGCCUcccgaaggaugcCGACGugCUCGcggACCUGCGc- -3' miRNA: 3'- -GUCGGA------------GCUGCugGAGC---UGGACGCcc -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 208 | 0.69 | 0.281576 |
Target: 5'- gAGCCUUGccuuCGGCCUgacgCGGCCcucGCGGGc -3' miRNA: 3'- gUCGGAGCu---GCUGGA----GCUGGa--CGCCC- -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 22036 | 0.69 | 0.291567 |
Target: 5'- -uGCCaUCGACGugCUCGAucacguucgcaccgcCCUGgUGGGc -3' miRNA: 3'- guCGG-AGCUGCugGAGCU---------------GGAC-GCCC- -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 14283 | 0.68 | 0.295933 |
Target: 5'- -uGCuCUUGACGACCUugucgaCGGCCgcgGCGGc -3' miRNA: 3'- guCG-GAGCUGCUGGA------GCUGGa--CGCCc -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 7762 | 0.68 | 0.310853 |
Target: 5'- gUAGCCUCGACGccgcccgcgagcGCCUCGACa-GCa-- -3' miRNA: 3'- -GUCGGAGCUGC------------UGGAGCUGgaCGccc -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 3561 | 0.68 | 0.318525 |
Target: 5'- aCGGCCgCGAUGaAUCUCG-CC-GCGGGc -3' miRNA: 3'- -GUCGGaGCUGC-UGGAGCuGGaCGCCC- -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 22834 | 0.68 | 0.334293 |
Target: 5'- cCGGCCgCGGCGaAUCUCGugCUGaagaacgacuCGGGc -3' miRNA: 3'- -GUCGGaGCUGC-UGGAGCugGAC----------GCCC- -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 29226 | 0.68 | 0.334293 |
Target: 5'- uGGCUUCGACGaaccGCCgUCGACCgugacaauccGCGGa -3' miRNA: 3'- gUCGGAGCUGC----UGG-AGCUGGa---------CGCCc -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 33068 | 0.67 | 0.342388 |
Target: 5'- aAGCC-CGgucuGCGACugCUCGACCUGCGc- -3' miRNA: 3'- gUCGGaGC----UGCUG--GAGCUGGACGCcc -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 32181 | 0.67 | 0.342388 |
Target: 5'- gGGCgUguACGACgUUGACCUGcCGGGa -3' miRNA: 3'- gUCGgAgcUGCUGgAGCUGGAC-GCCC- -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 24526 | 0.66 | 0.402026 |
Target: 5'- gGGCCaaGACGACaaCGACUgcgcaggUGUGGGg -3' miRNA: 3'- gUCGGagCUGCUGgaGCUGG-------ACGCCC- -5' |
|||||||
27562 | 5' | -59.3 | NC_005882.1 | + | 6632 | 0.66 | 0.412125 |
Target: 5'- cCAGCUUCGaaGCGAgUUCGGCgucaaggccgCUGCGGa -3' miRNA: 3'- -GUCGGAGC--UGCUgGAGCUG----------GACGCCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home