miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27563 3' -58 NC_005882.1 + 21096 0.67 0.406283
Target:  5'- gCAGC-CGGCGCGAaggcgcucggCGUUGCCGAa-- -3'
miRNA:   3'- -GUCGaGCUGCGCUa---------GCAGCGGCUcga -5'
27563 3' -58 NC_005882.1 + 27902 0.67 0.406283
Target:  5'- gGGUUCGAUGCGAccuUCGgUGCCGA-CUa -3'
miRNA:   3'- gUCGAGCUGCGCU---AGCaGCGGCUcGA- -5'
27563 3' -58 NC_005882.1 + 28379 0.67 0.39702
Target:  5'- uGGCcgUCGACGCGGUCaagGUCGUCcagaAGCUg -3'
miRNA:   3'- gUCG--AGCUGCGCUAG---CAGCGGc---UCGA- -5'
27563 3' -58 NC_005882.1 + 15311 0.67 0.387895
Target:  5'- uGGUUCGcCGCGugccguUCaUCGUCGAGCUg -3'
miRNA:   3'- gUCGAGCuGCGCu-----AGcAGCGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 14265 0.67 0.387895
Target:  5'- gCGGC-CGACGCGAUCcGUCGUCa---- -3'
miRNA:   3'- -GUCGaGCUGCGCUAG-CAGCGGcucga -5'
27563 3' -58 NC_005882.1 + 24059 0.68 0.370063
Target:  5'- -cGCUCGGCaUGAUCGgcaagGUCGAGCUg -3'
miRNA:   3'- guCGAGCUGcGCUAGCag---CGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 6907 0.68 0.361359
Target:  5'- -cGCUCaugGugGCGAUa-UCGUCGAGCUu -3'
miRNA:   3'- guCGAG---CugCGCUAgcAGCGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 29122 0.68 0.352799
Target:  5'- uGGCUCGAUGCG-UgGUauCCGGGCa -3'
miRNA:   3'- gUCGAGCUGCGCuAgCAgcGGCUCGa -5'
27563 3' -58 NC_005882.1 + 12686 0.68 0.344384
Target:  5'- gAGCUUGGCGaccuucgCGUCGCCG-GCa -3'
miRNA:   3'- gUCGAGCUGCgcua---GCAGCGGCuCGa -5'
27563 3' -58 NC_005882.1 + 19609 0.68 0.336114
Target:  5'- -cGCUC-ACGCGccugcgCGUCGgCGAGCUg -3'
miRNA:   3'- guCGAGcUGCGCua----GCAGCgGCUCGA- -5'
27563 3' -58 NC_005882.1 + 662 0.68 0.336114
Target:  5'- cCAGCUCgGGCGCGAga-UUGCCGAccGCa -3'
miRNA:   3'- -GUCGAG-CUGCGCUagcAGCGGCU--CGa -5'
27563 3' -58 NC_005882.1 + 7854 0.68 0.336114
Target:  5'- -cGCUUGAgGCGAUgGgguUCGCgGAGCg -3'
miRNA:   3'- guCGAGCUgCGCUAgC---AGCGgCUCGa -5'
27563 3' -58 NC_005882.1 + 25568 0.68 0.336114
Target:  5'- cCGGC-CGAgGCGGUCGUacugGCCGcGCa -3'
miRNA:   3'- -GUCGaGCUgCGCUAGCAg---CGGCuCGa -5'
27563 3' -58 NC_005882.1 + 8048 0.68 0.336114
Target:  5'- uGGaUCGuCGCGAUCGUUucgucugcauugGCCGAGCc -3'
miRNA:   3'- gUCgAGCuGCGCUAGCAG------------CGGCUCGa -5'
27563 3' -58 NC_005882.1 + 27010 0.68 0.327989
Target:  5'- gGGCgCGGCGCGcUCGUCGuuGGccGCg -3'
miRNA:   3'- gUCGaGCUGCGCuAGCAGCggCU--CGa -5'
27563 3' -58 NC_005882.1 + 21183 0.69 0.320011
Target:  5'- -cGC-CGACaucgGCGGUCGUuucggcaaCGCCGAGCg -3'
miRNA:   3'- guCGaGCUG----CGCUAGCA--------GCGGCUCGa -5'
27563 3' -58 NC_005882.1 + 13813 0.69 0.318433
Target:  5'- uGGCUCGaaaGCGCGcUCGUCGagggcaacuucaCGGGCUa -3'
miRNA:   3'- gUCGAGC---UGCGCuAGCAGCg-----------GCUCGA- -5'
27563 3' -58 NC_005882.1 + 11987 0.69 0.31218
Target:  5'- gCGGCcacgGGCGCGG-CGgCGCCGAGCa -3'
miRNA:   3'- -GUCGag--CUGCGCUaGCaGCGGCUCGa -5'
27563 3' -58 NC_005882.1 + 23244 0.69 0.31218
Target:  5'- uCGGCgcaUCGAuguaCGCGAUCGcC-CCGAGCUg -3'
miRNA:   3'- -GUCG---AGCU----GCGCUAGCaGcGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 1545 0.69 0.304494
Target:  5'- aCGGgUCGACGCccaucgcaucGggCGUCGCCGcGCa -3'
miRNA:   3'- -GUCgAGCUGCG----------CuaGCAGCGGCuCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.