miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27563 3' -58 NC_005882.1 + 12800 0.66 0.46458
Target:  5'- gGGCuucUCGGCGaacaGGUCGcCGgCGAGCg -3'
miRNA:   3'- gUCG---AGCUGCg---CUAGCaGCgGCUCGa -5'
27563 3' -58 NC_005882.1 + 13378 0.75 0.122174
Target:  5'- aAGCUCGACGCGAUCG-CGCUcAGa- -3'
miRNA:   3'- gUCGAGCUGCGCUAGCaGCGGcUCga -5'
27563 3' -58 NC_005882.1 + 13448 0.69 0.28883
Target:  5'- aAGUuuUCGaaucugaGCGCGAUCG-CGUCGAGCUu -3'
miRNA:   3'- gUCG--AGC-------UGCGCUAGCaGCGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 13813 0.69 0.318433
Target:  5'- uGGCUCGaaaGCGCGcUCGUCGagggcaacuucaCGGGCUa -3'
miRNA:   3'- gUCGAGC---UGCGCuAGCAGCg-----------GCUCGA- -5'
27563 3' -58 NC_005882.1 + 14265 0.67 0.387895
Target:  5'- gCGGC-CGACGCGAUCcGUCGUCa---- -3'
miRNA:   3'- -GUCGaGCUGCGCUAG-CAGCGGcucga -5'
27563 3' -58 NC_005882.1 + 14818 0.66 0.46458
Target:  5'- uCAGCagCGccauCGCGGccuugagCGcUCGCCGAGCUg -3'
miRNA:   3'- -GUCGa-GCu---GCGCUa------GC-AGCGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 15311 0.67 0.387895
Target:  5'- uGGUUCGcCGCGugccguUCaUCGUCGAGCUg -3'
miRNA:   3'- gUCGAGCuGCGCu-----AGcAGCGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 16698 0.73 0.156674
Target:  5'- aGGCgacgUCGACGCGcgCGUCcgcgcagGCCGGGCUu -3'
miRNA:   3'- gUCG----AGCUGCGCuaGCAG-------CGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 19609 0.68 0.336114
Target:  5'- -cGCUC-ACGCGccugcgCGUCGgCGAGCUg -3'
miRNA:   3'- guCGAGcUGCGCua----GCAGCgGCUCGA- -5'
27563 3' -58 NC_005882.1 + 19922 0.69 0.302217
Target:  5'- cCAGCUCGGCGCGcuUCGgaucgacguucUCGCCGuacucgacggugucGGCg -3'
miRNA:   3'- -GUCGAGCUGCGCu-AGC-----------AGCGGC--------------UCGa -5'
27563 3' -58 NC_005882.1 + 20883 0.67 0.41568
Target:  5'- -uGCUCGGCGCGGa---CGCCG-GCUa -3'
miRNA:   3'- guCGAGCUGCGCUagcaGCGGCuCGA- -5'
27563 3' -58 NC_005882.1 + 21096 0.67 0.406283
Target:  5'- gCAGC-CGGCGCGAaggcgcucggCGUUGCCGAa-- -3'
miRNA:   3'- -GUCGaGCUGCGCUa---------GCAGCGGCUcga -5'
27563 3' -58 NC_005882.1 + 21183 0.69 0.320011
Target:  5'- -cGC-CGACaucgGCGGUCGUuucggcaaCGCCGAGCg -3'
miRNA:   3'- guCGaGCUG----CGCUAGCA--------GCGGCUCGa -5'
27563 3' -58 NC_005882.1 + 21506 0.66 0.454556
Target:  5'- gAGCuuUCGACGaugucgguauUGAUCGUCGUCG-GCg -3'
miRNA:   3'- gUCG--AGCUGC----------GCUAGCAGCGGCuCGa -5'
27563 3' -58 NC_005882.1 + 21766 0.7 0.254756
Target:  5'- -cGCcCGGCuCGggCGUCGCCGGGCc -3'
miRNA:   3'- guCGaGCUGcGCuaGCAGCGGCUCGa -5'
27563 3' -58 NC_005882.1 + 21808 0.71 0.235567
Target:  5'- -uGgUCGAUGCcAUCGUCGCCcGGCUg -3'
miRNA:   3'- guCgAGCUGCGcUAGCAGCGGcUCGA- -5'
27563 3' -58 NC_005882.1 + 21881 0.7 0.254756
Target:  5'- gCAGCUUGACGCGca----GCCGGGCg -3'
miRNA:   3'- -GUCGAGCUGCGCuagcagCGGCUCGa -5'
27563 3' -58 NC_005882.1 + 23174 0.73 0.160616
Target:  5'- cCAGCUCGGgGCGAUCGcguacaucgaugCGCCGAucgGCa -3'
miRNA:   3'- -GUCGAGCUgCGCUAGCa-----------GCGGCU---CGa -5'
27563 3' -58 NC_005882.1 + 23244 0.69 0.31218
Target:  5'- uCGGCgcaUCGAuguaCGCGAUCGcC-CCGAGCUg -3'
miRNA:   3'- -GUCG---AGCU----GCGCUAGCaGcGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 23426 0.66 0.454556
Target:  5'- gCAGCUCGuCgGCGucaCGggCGUCGAGCg -3'
miRNA:   3'- -GUCGAGCuG-CGCua-GCa-GCGGCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.