miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27563 3' -58 NC_005882.1 + 481 0.72 0.200829
Target:  5'- cCAGCUCGGCaUGGUUGUCGCCGcGGa- -3'
miRNA:   3'- -GUCGAGCUGcGCUAGCAGCGGC-UCga -5'
27563 3' -58 NC_005882.1 + 588 0.66 0.484966
Target:  5'- uGGC-CGGCcauGCGGUCGgcaaucucgCGCCcGAGCUg -3'
miRNA:   3'- gUCGaGCUG---CGCUAGCa--------GCGG-CUCGA- -5'
27563 3' -58 NC_005882.1 + 662 0.68 0.336114
Target:  5'- cCAGCUCgGGCGCGAga-UUGCCGAccGCa -3'
miRNA:   3'- -GUCGAG-CUGCGCUagcAGCGGCU--CGa -5'
27563 3' -58 NC_005882.1 + 1545 0.69 0.304494
Target:  5'- aCGGgUCGACGCccaucgcaucGggCGUCGCCGcGCa -3'
miRNA:   3'- -GUCgAGCUGCG----------CuaGCAGCGGCuCGa -5'
27563 3' -58 NC_005882.1 + 3612 0.67 0.425209
Target:  5'- gCAGCgcgUCGACGCcgcuugcgucGAUcaCGUCGCCGAccgGCUu -3'
miRNA:   3'- -GUCG---AGCUGCG----------CUA--GCAGCGGCU---CGA- -5'
27563 3' -58 NC_005882.1 + 3629 0.75 0.125667
Target:  5'- cCAGCacgCGACGCGAUCGU-GCCGAaacggugucGCUg -3'
miRNA:   3'- -GUCGa--GCUGCGCUAGCAgCGGCU---------CGA- -5'
27563 3' -58 NC_005882.1 + 4730 0.84 0.024525
Target:  5'- aAGCUCGGCGaCGAUCG-CGUCGAGCUg -3'
miRNA:   3'- gUCGAGCUGC-GCUAGCaGCGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 4793 1.06 0.000524
Target:  5'- gCAGCUCGACGCGAUCGUCGCCGAGCUu -3'
miRNA:   3'- -GUCGAGCUGCGCUAGCAGCGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 4883 0.66 0.474719
Target:  5'- gAGUUCGACGCGcggcgcaacgagGUCGUguuccgUGCCGcGGCg -3'
miRNA:   3'- gUCGAGCUGCGC------------UAGCA------GCGGC-UCGa -5'
27563 3' -58 NC_005882.1 + 5341 0.67 0.425209
Target:  5'- uGGCgaggaauaCGACGUG-UCGUCgguGCCGGGCg -3'
miRNA:   3'- gUCGa-------GCUGCGCuAGCAG---CGGCUCGa -5'
27563 3' -58 NC_005882.1 + 6907 0.68 0.361359
Target:  5'- -cGCUCaugGugGCGAUa-UCGUCGAGCUu -3'
miRNA:   3'- guCGAG---CugCGCUAgcAGCGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 7838 0.66 0.431956
Target:  5'- -uGUUCGACgGCGAgagguUCGucgccuuggugaguUCGCCGGGCg -3'
miRNA:   3'- guCGAGCUG-CGCU-----AGC--------------AGCGGCUCGa -5'
27563 3' -58 NC_005882.1 + 7854 0.68 0.336114
Target:  5'- -cGCUUGAgGCGAUgGgguUCGCgGAGCg -3'
miRNA:   3'- guCGAGCUgCGCUAgC---AGCGgCUCGa -5'
27563 3' -58 NC_005882.1 + 8048 0.68 0.336114
Target:  5'- uGGaUCGuCGCGAUCGUUucgucugcauugGCCGAGCc -3'
miRNA:   3'- gUCgAGCuGCGCUAGCAG------------CGGCUCGa -5'
27563 3' -58 NC_005882.1 + 8922 0.71 0.229446
Target:  5'- cCAGCUUGACgGCGAuuUCGUgCGCCuGGCc -3'
miRNA:   3'- -GUCGAGCUG-CGCU--AGCA-GCGGcUCGa -5'
27563 3' -58 NC_005882.1 + 10998 0.66 0.484966
Target:  5'- gCAGCgaaCGGCuGaCGAUCGagGCCGAGg- -3'
miRNA:   3'- -GUCGa--GCUG-C-GCUAGCagCGGCUCga -5'
27563 3' -58 NC_005882.1 + 11987 0.69 0.31218
Target:  5'- gCGGCcacgGGCGCGG-CGgCGCCGAGCa -3'
miRNA:   3'- -GUCGag--CUGCGCUaGCaGCGGCUCGa -5'
27563 3' -58 NC_005882.1 + 12028 0.75 0.118771
Target:  5'- uCAGCUCGGCGCGGUaCGccagcgccUCGgCGGGCa -3'
miRNA:   3'- -GUCGAGCUGCGCUA-GC--------AGCgGCUCGa -5'
27563 3' -58 NC_005882.1 + 12623 0.72 0.206292
Target:  5'- -uGCcggCGACGCGAagGUCGCCaAGCUc -3'
miRNA:   3'- guCGa--GCUGCGCUagCAGCGGcUCGA- -5'
27563 3' -58 NC_005882.1 + 12686 0.68 0.344384
Target:  5'- gAGCUUGGCGaccuucgCGUCGCCG-GCa -3'
miRNA:   3'- gUCGAGCUGCgcua---GCAGCGGCuCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.