miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27563 3' -58 NC_005882.1 + 33052 0.66 0.478804
Target:  5'- -uGCUCGACcugcgccuucagguaGCGcgUGcggcCGCCGAGCUg -3'
miRNA:   3'- guCGAGCUG---------------CGCuaGCa---GCGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 32776 0.67 0.41568
Target:  5'- gCAGCaacgccgcuugaUCGugGUGAUCG-CGCgauCGAGCa -3'
miRNA:   3'- -GUCG------------AGCugCGCUAGCaGCG---GCUCGa -5'
27563 3' -58 NC_005882.1 + 32020 0.67 0.425209
Target:  5'- uCAGCggccgcCGACGCucgucggucaGGUUGUCGCguaCGAGCUg -3'
miRNA:   3'- -GUCGa-----GCUGCG----------CUAGCAGCG---GCUCGA- -5'
27563 3' -58 NC_005882.1 + 31701 0.66 0.44465
Target:  5'- uUAGCgaccgucacgUCGACGUcgcccaGGUCGUCGaCGAGCg -3'
miRNA:   3'- -GUCG----------AGCUGCG------CUAGCAGCgGCUCGa -5'
27563 3' -58 NC_005882.1 + 31521 0.66 0.44465
Target:  5'- ----cCGACGUGAcgcUCGUCGCCG-GCc -3'
miRNA:   3'- gucgaGCUGCGCU---AGCAGCGGCuCGa -5'
27563 3' -58 NC_005882.1 + 30504 0.66 0.434867
Target:  5'- uGGgUCG-CGCGAUCGUacUCGAGCa -3'
miRNA:   3'- gUCgAGCuGCGCUAGCAgcGGCUCGa -5'
27563 3' -58 NC_005882.1 + 30260 0.7 0.268249
Target:  5'- uCAGC-CGuACGCGcgCGaaGCCGGGCUu -3'
miRNA:   3'- -GUCGaGC-UGCGCuaGCagCGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 29391 0.71 0.241825
Target:  5'- -cGCcacgCGAgcCGCGAUCGUCGCC-AGCg -3'
miRNA:   3'- guCGa---GCU--GCGCUAGCAGCGGcUCGa -5'
27563 3' -58 NC_005882.1 + 29122 0.68 0.352799
Target:  5'- uGGCUCGAUGCG-UgGUauCCGGGCa -3'
miRNA:   3'- gUCGAGCUGCGCuAgCAgcGGCUCGa -5'
27563 3' -58 NC_005882.1 + 28379 0.67 0.39702
Target:  5'- uGGCcgUCGACGCGGUCaagGUCGUCcagaAGCUg -3'
miRNA:   3'- gUCG--AGCUGCGCUAG---CAGCGGc---UCGA- -5'
27563 3' -58 NC_005882.1 + 27902 0.67 0.406283
Target:  5'- gGGUUCGAUGCGAccuUCGgUGCCGA-CUa -3'
miRNA:   3'- gUCGAGCUGCGCU---AGCaGCGGCUcGA- -5'
27563 3' -58 NC_005882.1 + 27865 0.7 0.261431
Target:  5'- -cGCUCGcgcuuCGCGAgcagGUCGUCGAGCa -3'
miRNA:   3'- guCGAGCu----GCGCUag--CAGCGGCUCGa -5'
27563 3' -58 NC_005882.1 + 27643 0.69 0.296955
Target:  5'- gCAGCUCGGgGCGGa--UCGCCG-GCUg -3'
miRNA:   3'- -GUCGAGCUgCGCUagcAGCGGCuCGA- -5'
27563 3' -58 NC_005882.1 + 27010 0.68 0.327989
Target:  5'- gGGCgCGGCGCGcUCGUCGuuGGccGCg -3'
miRNA:   3'- gUCGaGCUGCGCuAGCAGCggCU--CGa -5'
27563 3' -58 NC_005882.1 + 25568 0.68 0.336114
Target:  5'- cCGGC-CGAgGCGGUCGUacugGCCGcGCa -3'
miRNA:   3'- -GUCGaGCUgCGCUAGCAg---CGGCuCGa -5'
27563 3' -58 NC_005882.1 + 24838 0.66 0.484966
Target:  5'- gGGCgcccaGCGAUCaGcCGCCGAGCa -3'
miRNA:   3'- gUCGagcugCGCUAG-CaGCGGCUCGa -5'
27563 3' -58 NC_005882.1 + 24386 0.66 0.474719
Target:  5'- -uGCUUGAUGUaGGUCG-CGCCGAacGCg -3'
miRNA:   3'- guCGAGCUGCG-CUAGCaGCGGCU--CGa -5'
27563 3' -58 NC_005882.1 + 24124 0.72 0.206292
Target:  5'- gCAGCUCGACcuugcCGAUCa-UGCCGAGCg -3'
miRNA:   3'- -GUCGAGCUGc----GCUAGcaGCGGCUCGa -5'
27563 3' -58 NC_005882.1 + 24059 0.68 0.370063
Target:  5'- -cGCUCGGCaUGAUCGgcaagGUCGAGCUg -3'
miRNA:   3'- guCGAGCUGcGCUAGCag---CGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 23491 0.66 0.454556
Target:  5'- -cGCUCGACGCc--CGUgaCGCCGAcgaGCUg -3'
miRNA:   3'- guCGAGCUGCGcuaGCA--GCGGCU---CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.