miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27563 3' -58 NC_005882.1 + 4793 1.06 0.000524
Target:  5'- gCAGCUCGACGCGAUCGUCGCCGAGCUu -3'
miRNA:   3'- -GUCGAGCUGCGCUAGCAGCGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 4730 0.84 0.024525
Target:  5'- aAGCUCGGCGaCGAUCG-CGUCGAGCUg -3'
miRNA:   3'- gUCGAGCUGC-GCUAGCaGCGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 12028 0.75 0.118771
Target:  5'- uCAGCUCGGCGCGGUaCGccagcgccUCGgCGGGCa -3'
miRNA:   3'- -GUCGAGCUGCGCUA-GC--------AGCgGCUCGa -5'
27563 3' -58 NC_005882.1 + 13378 0.75 0.122174
Target:  5'- aAGCUCGACGCGAUCG-CGCUcAGa- -3'
miRNA:   3'- gUCGAGCUGCGCUAGCaGCGGcUCga -5'
27563 3' -58 NC_005882.1 + 3629 0.75 0.125667
Target:  5'- cCAGCacgCGACGCGAUCGU-GCCGAaacggugucGCUg -3'
miRNA:   3'- -GUCGa--GCUGCGCUAGCAgCGGCU---------CGA- -5'
27563 3' -58 NC_005882.1 + 16698 0.73 0.156674
Target:  5'- aGGCgacgUCGACGCGcgCGUCcgcgcagGCCGGGCUu -3'
miRNA:   3'- gUCG----AGCUGCGCuaGCAG-------CGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 23174 0.73 0.160616
Target:  5'- cCAGCUCGGgGCGAUCGcguacaucgaugCGCCGAucgGCa -3'
miRNA:   3'- -GUCGAGCUgCGCUAGCa-----------GCGGCU---CGa -5'
27563 3' -58 NC_005882.1 + 481 0.72 0.200829
Target:  5'- cCAGCUCGGCaUGGUUGUCGCCGcGGa- -3'
miRNA:   3'- -GUCGAGCUGcGCUAGCAGCGGC-UCga -5'
27563 3' -58 NC_005882.1 + 12623 0.72 0.206292
Target:  5'- -uGCcggCGACGCGAagGUCGCCaAGCUc -3'
miRNA:   3'- guCGa--GCUGCGCUagCAGCGGcUCGA- -5'
27563 3' -58 NC_005882.1 + 24124 0.72 0.206292
Target:  5'- gCAGCUCGACcuugcCGAUCa-UGCCGAGCg -3'
miRNA:   3'- -GUCGAGCUGc----GCUAGcaGCGGCUCGa -5'
27563 3' -58 NC_005882.1 + 8922 0.71 0.229446
Target:  5'- cCAGCUUGACgGCGAuuUCGUgCGCCuGGCc -3'
miRNA:   3'- -GUCGAGCUG-CGCU--AGCA-GCGGcUCGa -5'
27563 3' -58 NC_005882.1 + 21808 0.71 0.235567
Target:  5'- -uGgUCGAUGCcAUCGUCGCCcGGCUg -3'
miRNA:   3'- guCgAGCUGCGcUAGCAGCGGcUCGA- -5'
27563 3' -58 NC_005882.1 + 29391 0.71 0.241825
Target:  5'- -cGCcacgCGAgcCGCGAUCGUCGCC-AGCg -3'
miRNA:   3'- guCGa---GCU--GCGCUAGCAGCGGcUCGa -5'
27563 3' -58 NC_005882.1 + 21766 0.7 0.254756
Target:  5'- -cGCcCGGCuCGggCGUCGCCGGGCc -3'
miRNA:   3'- guCGaGCUGcGCuaGCAGCGGCUCGa -5'
27563 3' -58 NC_005882.1 + 21881 0.7 0.254756
Target:  5'- gCAGCUUGACGCGca----GCCGGGCg -3'
miRNA:   3'- -GUCGAGCUGCGCuagcagCGGCUCGa -5'
27563 3' -58 NC_005882.1 + 27865 0.7 0.261431
Target:  5'- -cGCUCGcgcuuCGCGAgcagGUCGUCGAGCa -3'
miRNA:   3'- guCGAGCu----GCGCUag--CAGCGGCUCGa -5'
27563 3' -58 NC_005882.1 + 30260 0.7 0.268249
Target:  5'- uCAGC-CGuACGCGcgCGaaGCCGGGCUu -3'
miRNA:   3'- -GUCGaGC-UGCGCuaGCagCGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 13448 0.69 0.28883
Target:  5'- aAGUuuUCGaaucugaGCGCGAUCG-CGUCGAGCUu -3'
miRNA:   3'- gUCG--AGC-------UGCGCUAGCaGCGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 27643 0.69 0.296955
Target:  5'- gCAGCUCGGgGCGGa--UCGCCG-GCUg -3'
miRNA:   3'- -GUCGAGCUgCGCUagcAGCGGCuCGA- -5'
27563 3' -58 NC_005882.1 + 19922 0.69 0.302217
Target:  5'- cCAGCUCGGCGCGcuUCGgaucgacguucUCGCCGuacucgacggugucGGCg -3'
miRNA:   3'- -GUCGAGCUGCGCu-AGC-----------AGCGGC--------------UCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.