miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27563 3' -58 NC_005882.1 + 27902 0.67 0.406283
Target:  5'- gGGUUCGAUGCGAccuUCGgUGCCGA-CUa -3'
miRNA:   3'- gUCGAGCUGCGCU---AGCaGCGGCUcGA- -5'
27563 3' -58 NC_005882.1 + 8048 0.68 0.336114
Target:  5'- uGGaUCGuCGCGAUCGUUucgucugcauugGCCGAGCc -3'
miRNA:   3'- gUCgAGCuGCGCUAGCAG------------CGGCUCGa -5'
27563 3' -58 NC_005882.1 + 29122 0.68 0.352799
Target:  5'- uGGCUCGAUGCG-UgGUauCCGGGCa -3'
miRNA:   3'- gUCGAGCUGCGCuAgCAgcGGCUCGa -5'
27563 3' -58 NC_005882.1 + 6907 0.68 0.361359
Target:  5'- -cGCUCaugGugGCGAUa-UCGUCGAGCUu -3'
miRNA:   3'- guCGAG---CugCGCUAgcAGCGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 24059 0.68 0.370063
Target:  5'- -cGCUCGGCaUGAUCGgcaagGUCGAGCUg -3'
miRNA:   3'- guCGAGCUGcGCUAGCag---CGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 14265 0.67 0.387895
Target:  5'- gCGGC-CGACGCGAUCcGUCGUCa---- -3'
miRNA:   3'- -GUCGaGCUGCGCUAG-CAGCGGcucga -5'
27563 3' -58 NC_005882.1 + 15311 0.67 0.387895
Target:  5'- uGGUUCGcCGCGugccguUCaUCGUCGAGCUg -3'
miRNA:   3'- gUCGAGCuGCGCu-----AGcAGCGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 28379 0.67 0.39702
Target:  5'- uGGCcgUCGACGCGGUCaagGUCGUCcagaAGCUg -3'
miRNA:   3'- gUCG--AGCUGCGCUAG---CAGCGGc---UCGA- -5'
27563 3' -58 NC_005882.1 + 21096 0.67 0.406283
Target:  5'- gCAGC-CGGCGCGAaggcgcucggCGUUGCCGAa-- -3'
miRNA:   3'- -GUCGaGCUGCGCUa---------GCAGCGGCUcga -5'
27563 3' -58 NC_005882.1 + 27010 0.68 0.327989
Target:  5'- gGGCgCGGCGCGcUCGUCGuuGGccGCg -3'
miRNA:   3'- gUCGaGCUGCGCuAGCAGCggCU--CGa -5'
27563 3' -58 NC_005882.1 + 13813 0.69 0.318433
Target:  5'- uGGCUCGaaaGCGCGcUCGUCGagggcaacuucaCGGGCUa -3'
miRNA:   3'- gUCGAGC---UGCGCuAGCAGCg-----------GCUCGA- -5'
27563 3' -58 NC_005882.1 + 1545 0.69 0.304494
Target:  5'- aCGGgUCGACGCccaucgcaucGggCGUCGCCGcGCa -3'
miRNA:   3'- -GUCgAGCUGCG----------CuaGCAGCGGCuCGa -5'
27563 3' -58 NC_005882.1 + 13378 0.75 0.122174
Target:  5'- aAGCUCGACGCGAUCG-CGCUcAGa- -3'
miRNA:   3'- gUCGAGCUGCGCUAGCaGCGGcUCga -5'
27563 3' -58 NC_005882.1 + 16698 0.73 0.156674
Target:  5'- aGGCgacgUCGACGCGcgCGUCcgcgcagGCCGGGCUu -3'
miRNA:   3'- gUCG----AGCUGCGCuaGCAG-------CGGCUCGA- -5'
27563 3' -58 NC_005882.1 + 23174 0.73 0.160616
Target:  5'- cCAGCUCGGgGCGAUCGcguacaucgaugCGCCGAucgGCa -3'
miRNA:   3'- -GUCGAGCUgCGCUAGCa-----------GCGGCU---CGa -5'
27563 3' -58 NC_005882.1 + 481 0.72 0.200829
Target:  5'- cCAGCUCGGCaUGGUUGUCGCCGcGGa- -3'
miRNA:   3'- -GUCGAGCUGcGCUAGCAGCGGC-UCga -5'
27563 3' -58 NC_005882.1 + 12623 0.72 0.206292
Target:  5'- -uGCcggCGACGCGAagGUCGCCaAGCUc -3'
miRNA:   3'- guCGa--GCUGCGCUagCAGCGGcUCGA- -5'
27563 3' -58 NC_005882.1 + 8922 0.71 0.229446
Target:  5'- cCAGCUUGACgGCGAuuUCGUgCGCCuGGCc -3'
miRNA:   3'- -GUCGAGCUG-CGCU--AGCA-GCGGcUCGa -5'
27563 3' -58 NC_005882.1 + 21808 0.71 0.235567
Target:  5'- -uGgUCGAUGCcAUCGUCGCCcGGCUg -3'
miRNA:   3'- guCgAGCUGCGcUAGCAGCGGcUCGA- -5'
27563 3' -58 NC_005882.1 + 27643 0.69 0.296955
Target:  5'- gCAGCUCGGgGCGGa--UCGCCG-GCUg -3'
miRNA:   3'- -GUCGAGCUgCGCUagcAGCGGCuCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.