Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27563 | 3' | -58 | NC_005882.1 | + | 12800 | 0.66 | 0.46458 |
Target: 5'- gGGCuucUCGGCGaacaGGUCGcCGgCGAGCg -3' miRNA: 3'- gUCG---AGCUGCg---CUAGCaGCgGCUCGa -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 14818 | 0.66 | 0.46458 |
Target: 5'- uCAGCagCGccauCGCGGccuugagCGcUCGCCGAGCUg -3' miRNA: 3'- -GUCGa-GCu---GCGCUa------GC-AGCGGCUCGA- -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 33052 | 0.66 | 0.478804 |
Target: 5'- -uGCUCGACcugcgccuucagguaGCGcgUGcggcCGCCGAGCUg -3' miRNA: 3'- guCGAGCUG---------------CGCuaGCa---GCGGCUCGA- -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 23491 | 0.66 | 0.454556 |
Target: 5'- -cGCUCGACGCc--CGUgaCGCCGAcgaGCUg -3' miRNA: 3'- guCGAGCUGCGcuaGCA--GCGGCU---CGA- -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 21506 | 0.66 | 0.454556 |
Target: 5'- gAGCuuUCGACGaugucgguauUGAUCGUCGUCG-GCg -3' miRNA: 3'- gUCG--AGCUGC----------GCUAGCAGCGGCuCGa -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 31701 | 0.66 | 0.44465 |
Target: 5'- uUAGCgaccgucacgUCGACGUcgcccaGGUCGUCGaCGAGCg -3' miRNA: 3'- -GUCG----------AGCUGCG------CUAGCAGCgGCUCGa -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 30504 | 0.66 | 0.434867 |
Target: 5'- uGGgUCG-CGCGAUCGUacUCGAGCa -3' miRNA: 3'- gUCgAGCuGCGCUAGCAgcGGCUCGa -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 24386 | 0.66 | 0.474719 |
Target: 5'- -uGCUUGAUGUaGGUCG-CGCCGAacGCg -3' miRNA: 3'- guCGAGCUGCG-CUAGCaGCGGCU--CGa -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 24838 | 0.66 | 0.484966 |
Target: 5'- gGGCgcccaGCGAUCaGcCGCCGAGCa -3' miRNA: 3'- gUCGagcugCGCUAG-CaGCGGCUCGa -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 31521 | 0.66 | 0.44465 |
Target: 5'- ----cCGACGUGAcgcUCGUCGCCG-GCc -3' miRNA: 3'- gucgaGCUGCGCU---AGCAGCGGCuCGa -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 588 | 0.66 | 0.484966 |
Target: 5'- uGGC-CGGCcauGCGGUCGgcaaucucgCGCCcGAGCUg -3' miRNA: 3'- gUCGaGCUG---CGCUAGCa--------GCGG-CUCGA- -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 10998 | 0.66 | 0.484966 |
Target: 5'- gCAGCgaaCGGCuGaCGAUCGagGCCGAGg- -3' miRNA: 3'- -GUCGa--GCUG-C-GCUAGCagCGGCUCga -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 4883 | 0.66 | 0.474719 |
Target: 5'- gAGUUCGACGCGcggcgcaacgagGUCGUguuccgUGCCGcGGCg -3' miRNA: 3'- gUCGAGCUGCGC------------UAGCA------GCGGC-UCGa -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 23426 | 0.66 | 0.454556 |
Target: 5'- gCAGCUCGuCgGCGucaCGggCGUCGAGCg -3' miRNA: 3'- -GUCGAGCuG-CGCua-GCa-GCGGCUCGa -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 7838 | 0.66 | 0.431956 |
Target: 5'- -uGUUCGACgGCGAgagguUCGucgccuuggugaguUCGCCGGGCg -3' miRNA: 3'- guCGAGCUG-CGCU-----AGC--------------AGCGGCUCGa -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 21096 | 0.67 | 0.406283 |
Target: 5'- gCAGC-CGGCGCGAaggcgcucggCGUUGCCGAa-- -3' miRNA: 3'- -GUCGaGCUGCGCUa---------GCAGCGGCUcga -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 28379 | 0.67 | 0.39702 |
Target: 5'- uGGCcgUCGACGCGGUCaagGUCGUCcagaAGCUg -3' miRNA: 3'- gUCG--AGCUGCGCUAG---CAGCGGc---UCGA- -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 15311 | 0.67 | 0.387895 |
Target: 5'- uGGUUCGcCGCGugccguUCaUCGUCGAGCUg -3' miRNA: 3'- gUCGAGCuGCGCu-----AGcAGCGGCUCGA- -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 3612 | 0.67 | 0.425209 |
Target: 5'- gCAGCgcgUCGACGCcgcuugcgucGAUcaCGUCGCCGAccgGCUu -3' miRNA: 3'- -GUCG---AGCUGCG----------CUA--GCAGCGGCU---CGA- -5' |
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27563 | 3' | -58 | NC_005882.1 | + | 5341 | 0.67 | 0.425209 |
Target: 5'- uGGCgaggaauaCGACGUG-UCGUCgguGCCGGGCg -3' miRNA: 3'- gUCGa-------GCUGCGCuAGCAG---CGGCUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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