miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27564 3' -50.3 NC_005882.1 + 34293 0.66 0.879225
Target:  5'- gCGGucGAGCCGAUgUUCGagaaacggaucGCCGcACCa -3'
miRNA:   3'- -GCUguUUCGGCUAgAAGU-----------CGGCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 31668 0.68 0.7644
Target:  5'- uCGACGagcGAGCCGAguugccccggCUgcCAGCCGUuCCc -3'
miRNA:   3'- -GCUGU---UUCGGCUa---------GAa-GUCGGCAuGG- -5'
27564 3' -50.3 NC_005882.1 + 31024 0.71 0.604646
Target:  5'- gGugGGAGCCGcgCUgcgaGGUCGUGCg -3'
miRNA:   3'- gCugUUUCGGCuaGAag--UCGGCAUGg -5'
27564 3' -50.3 NC_005882.1 + 30537 0.7 0.685958
Target:  5'- cCGACAAGGUgaCGGUCgaCGuGCCGgagACCg -3'
miRNA:   3'- -GCUGUUUCG--GCUAGaaGU-CGGCa--UGG- -5'
27564 3' -50.3 NC_005882.1 + 30272 0.69 0.731423
Target:  5'- uGcCGAGGUCGG---UCAGCCGUACg -3'
miRNA:   3'- gCuGUUUCGGCUagaAGUCGGCAUGg -5'
27564 3' -50.3 NC_005882.1 + 30247 0.74 0.437461
Target:  5'- -cGCGAAGCCGggCUUCGacgcacuGaCCGUGCCg -3'
miRNA:   3'- gcUGUUUCGGCuaGAAGU-------C-GGCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 30046 0.73 0.480581
Target:  5'- aCGGCGAGcGCCGAgcgCUUCAGCuCG-ACUu -3'
miRNA:   3'- -GCUGUUU-CGGCUa--GAAGUCG-GCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 29487 0.75 0.388975
Target:  5'- gGGCAgcAAGCUGAUCUUCAgcgaacucGCCG-ACCu -3'
miRNA:   3'- gCUGU--UUCGGCUAGAAGU--------CGGCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 29337 0.68 0.785646
Target:  5'- gCGGCuucGGaCCGAUgcCUUCAcGCCaGUACCg -3'
miRNA:   3'- -GCUGuu-UC-GGCUA--GAAGU-CGG-CAUGG- -5'
27564 3' -50.3 NC_005882.1 + 29219 0.8 0.188489
Target:  5'- cCGGCGuAGCCGAUCUUCAGCgucagcgCGUcGCCu -3'
miRNA:   3'- -GCUGUuUCGGCUAGAAGUCG-------GCA-UGG- -5'
27564 3' -50.3 NC_005882.1 + 28909 0.7 0.639565
Target:  5'- aCGACGuAGCCGAUgaggagCUUCcGCCGUGg- -3'
miRNA:   3'- -GCUGUuUCGGCUA------GAAGuCGGCAUgg -5'
27564 3' -50.3 NC_005882.1 + 26957 0.69 0.731423
Target:  5'- cCGGCAAguucgcGGCCG-UgaUCGGgCGUGCCg -3'
miRNA:   3'- -GCUGUU------UCGGCuAgaAGUCgGCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 26819 0.73 0.469867
Target:  5'- gCGACcuucauGCCGAUCa-CGGCCGUugCg -3'
miRNA:   3'- -GCUGuuu---CGGCUAGaaGUCGGCAugG- -5'
27564 3' -50.3 NC_005882.1 + 26105 0.69 0.692857
Target:  5'- cCGGCAGAGCCuuggccauaucCUUCAGCuCGaACCg -3'
miRNA:   3'- -GCUGUUUCGGcua--------GAAGUCG-GCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 25724 0.67 0.806177
Target:  5'- cCGaACAgcGCCGAUUacgggcgCGGCCGUggcaGCCg -3'
miRNA:   3'- -GC-UGUuuCGGCUAGaa-----GUCGGCA----UGG- -5'
27564 3' -50.3 NC_005882.1 + 25576 0.66 0.879225
Target:  5'- uCGAUuguccGGCCGAgg--CGGUCGUACUg -3'
miRNA:   3'- -GCUGuu---UCGGCUagaaGUCGGCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 25456 0.74 0.438486
Target:  5'- gCGACGcGGCCGAggccaUUCAGCgucgugcgCGUGCCg -3'
miRNA:   3'- -GCUGUuUCGGCUag---AAGUCG--------GCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 24976 0.66 0.887165
Target:  5'- gGAC--GGCUGaAUCUUCAGCaccaGUAgCa -3'
miRNA:   3'- gCUGuuUCGGC-UAGAAGUCGg---CAUgG- -5'
27564 3' -50.3 NC_005882.1 + 24071 0.69 0.72019
Target:  5'- uCGGCAAGGUCGAg---CuGCCGggcgGCCu -3'
miRNA:   3'- -GCUGUUUCGGCUagaaGuCGGCa---UGG- -5'
27564 3' -50.3 NC_005882.1 + 22321 0.7 0.674414
Target:  5'- uGACGccGCUGGUCggUCcGCUGUACUg -3'
miRNA:   3'- gCUGUuuCGGCUAGa-AGuCGGCAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.