miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27564 3' -50.3 NC_005882.1 + 8775 0.66 0.862497
Target:  5'- uGACGAAGCgaGGUCU-C-GCCGaugACCg -3'
miRNA:   3'- gCUGUUUCGg-CUAGAaGuCGGCa--UGG- -5'
27564 3' -50.3 NC_005882.1 + 17862 0.68 0.775105
Target:  5'- -uGCGAGGCaucaaGGUCgaggCGGCCGgcgACCg -3'
miRNA:   3'- gcUGUUUCGg----CUAGaa--GUCGGCa--UGG- -5'
27564 3' -50.3 NC_005882.1 + 13714 0.68 0.785646
Target:  5'- uCGAUugcGAGCCGGgcaUCgcgCGGCCG-GCCa -3'
miRNA:   3'- -GCUGu--UUCGGCU---AGaa-GUCGGCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 20478 0.68 0.796007
Target:  5'- aCGGCAAGGaagCGAUCcgcacgaagaUCGGCCGccgGCCg -3'
miRNA:   3'- -GCUGUUUCg--GCUAGa---------AGUCGGCa--UGG- -5'
27564 3' -50.3 NC_005882.1 + 6918 0.67 0.806177
Target:  5'- gCGAUAucGUCGAgCUUCAGCUc-GCCg -3'
miRNA:   3'- -GCUGUuuCGGCUaGAAGUCGGcaUGG- -5'
27564 3' -50.3 NC_005882.1 + 11804 0.67 0.816143
Target:  5'- gGGCuacGAGCUGGUgUUC-GCCGcgGCCa -3'
miRNA:   3'- gCUGu--UUCGGCUAgAAGuCGGCa-UGG- -5'
27564 3' -50.3 NC_005882.1 + 402 0.67 0.835413
Target:  5'- uGGCGAGcGgCGAUCUccUCGcGCCGgACCg -3'
miRNA:   3'- gCUGUUU-CgGCUAGA--AGU-CGGCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 14083 0.67 0.844694
Target:  5'- cCGACGAAgacGCCGAUCca-GGCgaaCGUAUCg -3'
miRNA:   3'- -GCUGUUU---CGGCUAGaagUCG---GCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 18357 0.66 0.854615
Target:  5'- -cGCAAGGCCGGUCUgaugauccugcaggaCAGCgGgcaaaugGCCg -3'
miRNA:   3'- gcUGUUUCGGCUAGAa--------------GUCGgCa------UGG- -5'
27564 3' -50.3 NC_005882.1 + 12157 0.69 0.742545
Target:  5'- cCGGCcGAGCUGggCgaggcgCAGCCGUucaACCc -3'
miRNA:   3'- -GCUGuUUCGGCuaGaa----GUCGGCA---UGG- -5'
27564 3' -50.3 NC_005882.1 + 26957 0.69 0.731423
Target:  5'- cCGGCAAguucgcGGCCG-UgaUCGGgCGUGCCg -3'
miRNA:   3'- -GCUGUU------UCGGCuAgaAGUCgGCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 24071 0.69 0.72019
Target:  5'- uCGGCAAGGUCGAg---CuGCCGggcgGCCu -3'
miRNA:   3'- -GCUGUUUCGGCUagaaGuCGGCa---UGG- -5'
27564 3' -50.3 NC_005882.1 + 29487 0.75 0.388975
Target:  5'- gGGCAgcAAGCUGAUCUUCAgcgaacucGCCG-ACCu -3'
miRNA:   3'- gCUGU--UUCGGCUAGAAGU--------CGGCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 17673 0.72 0.547106
Target:  5'- uGGCGAAcGUCGAcgaUCGGCCGUACUg -3'
miRNA:   3'- gCUGUUU-CGGCUagaAGUCGGCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 2943 0.72 0.558501
Target:  5'- aGGuCGGuGCCGGUCUUCAGguCCGUccACCa -3'
miRNA:   3'- gCU-GUUuCGGCUAGAAGUC--GGCA--UGG- -5'
27564 3' -50.3 NC_005882.1 + 31024 0.71 0.604646
Target:  5'- gGugGGAGCCGcgCUgcgaGGUCGUGCg -3'
miRNA:   3'- gCugUUUCGGCuaGAag--UCGGCAUGg -5'
27564 3' -50.3 NC_005882.1 + 28909 0.7 0.639565
Target:  5'- aCGACGuAGCCGAUgaggagCUUCcGCCGUGg- -3'
miRNA:   3'- -GCUGUuUCGGCUA------GAAGuCGGCAUgg -5'
27564 3' -50.3 NC_005882.1 + 30537 0.7 0.685958
Target:  5'- cCGACAAGGUgaCGGUCgaCGuGCCGgagACCg -3'
miRNA:   3'- -GCUGUUUCG--GCUAGaaGU-CGGCa--UGG- -5'
27564 3' -50.3 NC_005882.1 + 12341 0.7 0.685958
Target:  5'- cCGGCGgcGCCGAUCggCAacGCUGguucgGCCa -3'
miRNA:   3'- -GCUGUuuCGGCUAGaaGU--CGGCa----UGG- -5'
27564 3' -50.3 NC_005882.1 + 8159 0.69 0.704302
Target:  5'- gCGuCGcGGCCGGUCgggaugucgaugaUCAGCCG-ACCg -3'
miRNA:   3'- -GCuGUuUCGGCUAGa------------AGUCGGCaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.