Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 12341 | 0.7 | 0.685958 |
Target: 5'- cCGGCGgcGCCGAUCggCAacGCUGguucgGCCa -3' miRNA: 3'- -GCUGUuuCGGCUAGaaGU--CGGCa----UGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 8159 | 0.69 | 0.704302 |
Target: 5'- gCGuCGcGGCCGGUCgggaugucgaugaUCAGCCG-ACCg -3' miRNA: 3'- -GCuGUuUCGGCUAGa------------AGUCGGCaUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 24071 | 0.69 | 0.72019 |
Target: 5'- uCGGCAAGGUCGAg---CuGCCGggcgGCCu -3' miRNA: 3'- -GCUGUUUCGGCUagaaGuCGGCa---UGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 11072 | 0.7 | 0.674414 |
Target: 5'- cCGGCGGuuccucGGCCucGAUCgUCAGCCGUucGCUg -3' miRNA: 3'- -GCUGUU------UCGG--CUAGaAGUCGGCA--UGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 20579 | 0.7 | 0.685958 |
Target: 5'- cCGACGca-CCGAUCaccaucgugUUCGGCCGgcgGCCg -3' miRNA: 3'- -GCUGUuucGGCUAG---------AAGUCGGCa--UGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 26105 | 0.69 | 0.692857 |
Target: 5'- cCGGCAGAGCCuuggccauaucCUUCAGCuCGaACCg -3' miRNA: 3'- -GCUGUUUCGGcua--------GAAGUCG-GCaUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 30272 | 0.69 | 0.731423 |
Target: 5'- uGcCGAGGUCGG---UCAGCCGUACg -3' miRNA: 3'- gCuGUUUCGGCUagaAGUCGGCAUGg -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 21163 | 0.69 | 0.742545 |
Target: 5'- uCGGCAAcGCCGAgcgcCUUCGcGCCG-GCUg -3' miRNA: 3'- -GCUGUUuCGGCUa---GAAGU-CGGCaUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 6762 | 0.68 | 0.753541 |
Target: 5'- aGGCGGAGUCGGUUauucgCGGCaaccugCGUGCCg -3' miRNA: 3'- gCUGUUUCGGCUAGaa---GUCG------GCAUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 31668 | 0.68 | 0.7644 |
Target: 5'- uCGACGagcGAGCCGAguugccccggCUgcCAGCCGUuCCc -3' miRNA: 3'- -GCUGU---UUCGGCUa---------GAa-GUCGGCAuGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 22321 | 0.7 | 0.674414 |
Target: 5'- uGACGccGCUGGUCggUCcGCUGUACUg -3' miRNA: 3'- gCUGUuuCGGCUAGa-AGuCGGCAUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 5036 | 0.71 | 0.627917 |
Target: 5'- aGGCAcuGCCGuUCggCGGCCGUcucgACCc -3' miRNA: 3'- gCUGUuuCGGCuAGaaGUCGGCA----UGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 5774 | 0.71 | 0.616274 |
Target: 5'- gCGGCGGGGCCGAcCUgcugCAcGgUGUGCCa -3' miRNA: 3'- -GCUGUUUCGGCUaGAa---GU-CgGCAUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 3319 | 0.73 | 0.513403 |
Target: 5'- aCGGCGGccGGCCGAcgaUCcagaUCGGCCcGUACCu -3' miRNA: 3'- -GCUGUU--UCGGCU---AGa---AGUCGG-CAUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 30046 | 0.73 | 0.480581 |
Target: 5'- aCGGCGAGcGCCGAgcgCUUCAGCuCG-ACUu -3' miRNA: 3'- -GCUGUUU-CGGCUa--GAAGUCG-GCaUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 26819 | 0.73 | 0.469867 |
Target: 5'- gCGACcuucauGCCGAUCa-CGGCCGUugCg -3' miRNA: 3'- -GCUGuuu---CGGCUAGaaGUCGGCAugG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 25456 | 0.74 | 0.438486 |
Target: 5'- gCGACGcGGCCGAggccaUUCAGCgucgugcgCGUGCCg -3' miRNA: 3'- -GCUGUuUCGGCUag---AAGUCG--------GCAUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 30247 | 0.74 | 0.437461 |
Target: 5'- -cGCGAAGCCGggCUUCGacgcacuGaCCGUGCCg -3' miRNA: 3'- gcUGUUUCGGCuaGAAGU-------C-GGCAUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 29219 | 0.8 | 0.188489 |
Target: 5'- cCGGCGuAGCCGAUCUUCAGCgucagcgCGUcGCCu -3' miRNA: 3'- -GCUGUuUCGGCUAGAAGUCG-------GCA-UGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 3730 | 0.66 | 0.894813 |
Target: 5'- gGACGAAuaccuCCGGUUcaagUUCGGCCGUcucgacaaGCCg -3' miRNA: 3'- gCUGUUUc----GGCUAG----AAGUCGGCA--------UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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