miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27564 3' -50.3 NC_005882.1 + 12341 0.7 0.685958
Target:  5'- cCGGCGgcGCCGAUCggCAacGCUGguucgGCCa -3'
miRNA:   3'- -GCUGUuuCGGCUAGaaGU--CGGCa----UGG- -5'
27564 3' -50.3 NC_005882.1 + 12400 0.66 0.887165
Target:  5'- -aGCGuuGCCGAUCggCGccGCCGgcaGCCg -3'
miRNA:   3'- gcUGUuuCGGCUAGaaGU--CGGCa--UGG- -5'
27564 3' -50.3 NC_005882.1 + 13554 0.66 0.871
Target:  5'- aUGACGAugcGCuCGAUCUUC-GCCG-ACa -3'
miRNA:   3'- -GCUGUUu--CG-GCUAGAAGuCGGCaUGg -5'
27564 3' -50.3 NC_005882.1 + 13714 0.68 0.785646
Target:  5'- uCGAUugcGAGCCGGgcaUCgcgCGGCCG-GCCa -3'
miRNA:   3'- -GCUGu--UUCGGCU---AGaa-GUCGGCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 13984 0.66 0.853726
Target:  5'- gCGGCGAAGCgGcgCUcgauacgCuGCCcGUACCg -3'
miRNA:   3'- -GCUGUUUCGgCuaGAa------GuCGG-CAUGG- -5'
27564 3' -50.3 NC_005882.1 + 14083 0.67 0.844694
Target:  5'- cCGACGAAgacGCCGAUCca-GGCgaaCGUAUCg -3'
miRNA:   3'- -GCUGUUU---CGGCUAGaagUCG---GCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 14266 0.66 0.894062
Target:  5'- uCGACGGccgcggcGGCCG--CUUCcGCgCGUGCCu -3'
miRNA:   3'- -GCUGUU-------UCGGCuaGAAGuCG-GCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 16269 0.66 0.871
Target:  5'- cCGACGAcGUCGAUCggCAcgauguaguuGCCG-ACCu -3'
miRNA:   3'- -GCUGUUuCGGCUAGaaGU----------CGGCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 17673 0.72 0.547106
Target:  5'- uGGCGAAcGUCGAcgaUCGGCCGUACUg -3'
miRNA:   3'- gCUGUUU-CGGCUagaAGUCGGCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 17862 0.68 0.775105
Target:  5'- -uGCGAGGCaucaaGGUCgaggCGGCCGgcgACCg -3'
miRNA:   3'- gcUGUUUCGg----CUAGaa--GUCGGCa--UGG- -5'
27564 3' -50.3 NC_005882.1 + 18357 0.66 0.854615
Target:  5'- -cGCAAGGCCGGUCUgaugauccugcaggaCAGCgGgcaaaugGCCg -3'
miRNA:   3'- gcUGUUUCGGCUAGAa--------------GUCGgCa------UGG- -5'
27564 3' -50.3 NC_005882.1 + 20478 0.68 0.796007
Target:  5'- aCGGCAAGGaagCGAUCcgcacgaagaUCGGCCGccgGCCg -3'
miRNA:   3'- -GCUGUUUCg--GCUAGa---------AGUCGGCa--UGG- -5'
27564 3' -50.3 NC_005882.1 + 20579 0.7 0.685958
Target:  5'- cCGACGca-CCGAUCaccaucgugUUCGGCCGgcgGCCg -3'
miRNA:   3'- -GCUGUuucGGCUAG---------AAGUCGGCa--UGG- -5'
27564 3' -50.3 NC_005882.1 + 21163 0.69 0.742545
Target:  5'- uCGGCAAcGCCGAgcgcCUUCGcGCCG-GCUg -3'
miRNA:   3'- -GCUGUUuCGGCUa---GAAGU-CGGCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 21202 0.66 0.878415
Target:  5'- uCGACGAGcauGCCGAggucgagUCggacgCGGCCG-GCCa -3'
miRNA:   3'- -GCUGUUU---CGGCU-------AGaa---GUCGGCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 22321 0.7 0.674414
Target:  5'- uGACGccGCUGGUCggUCcGCUGUACUg -3'
miRNA:   3'- gCUGUuuCGGCUAGa-AGuCGGCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 24071 0.69 0.72019
Target:  5'- uCGGCAAGGUCGAg---CuGCCGggcgGCCu -3'
miRNA:   3'- -GCUGUUUCGGCUagaaGuCGGCa---UGG- -5'
27564 3' -50.3 NC_005882.1 + 24976 0.66 0.887165
Target:  5'- gGAC--GGCUGaAUCUUCAGCaccaGUAgCa -3'
miRNA:   3'- gCUGuuUCGGC-UAGAAGUCGg---CAUgG- -5'
27564 3' -50.3 NC_005882.1 + 25456 0.74 0.438486
Target:  5'- gCGACGcGGCCGAggccaUUCAGCgucgugcgCGUGCCg -3'
miRNA:   3'- -GCUGUuUCGGCUag---AAGUCG--------GCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 25576 0.66 0.879225
Target:  5'- uCGAUuguccGGCCGAgg--CGGUCGUACUg -3'
miRNA:   3'- -GCUGuu---UCGGCUagaaGUCGGCAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.