miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27566 5' -57 NC_005882.1 + 21907 0.67 0.463636
Target:  5'- uCGGCGCGuuGCugGuCaGCUaUCcgGGc -3'
miRNA:   3'- -GCCGCGCggCGugCuGcUGA-AGuaCC- -5'
27566 5' -57 NC_005882.1 + 27632 0.67 0.463636
Target:  5'- cCGGCG-GCCGCGCGcGCGGCg------ -3'
miRNA:   3'- -GCCGCgCGGCGUGC-UGCUGaaguacc -5'
27566 5' -57 NC_005882.1 + 26199 0.67 0.463636
Target:  5'- cCGGCGC-CUuCGCGGcCGACUUCGaGGc -3'
miRNA:   3'- -GCCGCGcGGcGUGCU-GCUGAAGUaCC- -5'
27566 5' -57 NC_005882.1 + 17164 0.67 0.463636
Target:  5'- gCGGCGCGaccagcgcCUGCGCGuCGGCaUUCA-GGu -3'
miRNA:   3'- -GCCGCGC--------GGCGUGCuGCUG-AAGUaCC- -5'
27566 5' -57 NC_005882.1 + 29855 0.67 0.463636
Target:  5'- cCGGUcaaGCGCCGCGCG-UGcCUUCGUc- -3'
miRNA:   3'- -GCCG---CGCGGCGUGCuGCuGAAGUAcc -5'
27566 5' -57 NC_005882.1 + 6196 0.67 0.453658
Target:  5'- aGGCGCuuGCCGUucuuacGCGuCGACUcCAUGa -3'
miRNA:   3'- gCCGCG--CGGCG------UGCuGCUGAaGUACc -5'
27566 5' -57 NC_005882.1 + 19807 0.67 0.453658
Target:  5'- gCGaGCGCGCCgGCGUGACGACgacg-GGc -3'
miRNA:   3'- -GC-CGCGCGG-CGUGCUGCUGaaguaCC- -5'
27566 5' -57 NC_005882.1 + 14369 0.67 0.453658
Target:  5'- uGGUGCGCCGaCACGuCGcCcgUCAaGGu -3'
miRNA:   3'- gCCGCGCGGC-GUGCuGCuGa-AGUaCC- -5'
27566 5' -57 NC_005882.1 + 15650 0.67 0.453658
Target:  5'- aCGGCGCGCagguccgcgaGCACGuCGGCauccUUcgGGa -3'
miRNA:   3'- -GCCGCGCGg---------CGUGCuGCUGa---AGuaCC- -5'
27566 5' -57 NC_005882.1 + 11975 0.67 0.453658
Target:  5'- gCGGCgGCGCCGagcaaCGCGACGACaaaggcgaUCA-GGa -3'
miRNA:   3'- -GCCG-CGCGGC-----GUGCUGCUGa-------AGUaCC- -5'
27566 5' -57 NC_005882.1 + 4597 0.67 0.453658
Target:  5'- aCGGCGUaugGCCGCGCagccucGACGACcUCGa-- -3'
miRNA:   3'- -GCCGCG---CGGCGUG------CUGCUGaAGUacc -5'
27566 5' -57 NC_005882.1 + 3273 0.68 0.443797
Target:  5'- cCGGcCGcCGUCGCGCGGCGAgaucuCUUCGg-- -3'
miRNA:   3'- -GCC-GC-GCGGCGUGCUGCU-----GAAGUacc -5'
27566 5' -57 NC_005882.1 + 21190 0.68 0.443797
Target:  5'- cCGGCGCaCCGguCGACGAg--CAUGc -3'
miRNA:   3'- -GCCGCGcGGCguGCUGCUgaaGUACc -5'
27566 5' -57 NC_005882.1 + 15512 0.68 0.434057
Target:  5'- cCGuaGCGCUGCAUcGCGACUUCugcgaGGu -3'
miRNA:   3'- -GCcgCGCGGCGUGcUGCUGAAGua---CC- -5'
27566 5' -57 NC_005882.1 + 16969 0.68 0.414958
Target:  5'- cCGGCGUGaaaCGCGCGcCGGCUugcgUCAgcuuuUGGu -3'
miRNA:   3'- -GCCGCGCg--GCGUGCuGCUGA----AGU-----ACC- -5'
27566 5' -57 NC_005882.1 + 23410 0.68 0.414958
Target:  5'- aGGCcCGCCGCACGcgaugagaGCGGCUcCA-GGc -3'
miRNA:   3'- gCCGcGCGGCGUGC--------UGCUGAaGUaCC- -5'
27566 5' -57 NC_005882.1 + 22469 0.68 0.400055
Target:  5'- gGGCGCGCgggcuuggucgacggCGCuGCGGcCGGCUUCA-GGu -3'
miRNA:   3'- gCCGCGCG---------------GCG-UGCU-GCUGAAGUaCC- -5'
27566 5' -57 NC_005882.1 + 29227 0.68 0.396383
Target:  5'- aCGGCGCGCCG-GCGuagcCGAuCUUCAg-- -3'
miRNA:   3'- -GCCGCGCGGCgUGCu---GCU-GAAGUacc -5'
27566 5' -57 NC_005882.1 + 15037 0.69 0.369545
Target:  5'- -uGCGUGCCGaagaacaGCGGCGGCg-CAUGGc -3'
miRNA:   3'- gcCGCGCGGCg------UGCUGCUGaaGUACC- -5'
27566 5' -57 NC_005882.1 + 19854 0.69 0.36088
Target:  5'- cCGGCGCGCuCGCGCGugGcguGCU-CGc-- -3'
miRNA:   3'- -GCCGCGCG-GCGUGCugC---UGAaGUacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.