miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27566 5' -57 NC_005882.1 + 16969 0.68 0.414958
Target:  5'- cCGGCGUGaaaCGCGCGcCGGCUugcgUCAgcuuuUGGu -3'
miRNA:   3'- -GCCGCGCg--GCGUGCuGCUGA----AGU-----ACC- -5'
27566 5' -57 NC_005882.1 + 17164 0.67 0.463636
Target:  5'- gCGGCGCGaccagcgcCUGCGCGuCGGCaUUCA-GGu -3'
miRNA:   3'- -GCCGCGC--------GGCGUGCuGCUG-AAGUaCC- -5'
27566 5' -57 NC_005882.1 + 17206 0.67 0.48393
Target:  5'- gCGGaCGCGCUGCAgGaACGGCUUg---- -3'
miRNA:   3'- -GCC-GCGCGGCGUgC-UGCUGAAguacc -5'
27566 5' -57 NC_005882.1 + 17835 0.77 0.109397
Target:  5'- uGGCGCuGUCGCACGACGAgaUCAUc- -3'
miRNA:   3'- gCCGCG-CGGCGUGCUGCUgaAGUAcc -5'
27566 5' -57 NC_005882.1 + 18698 0.72 0.248198
Target:  5'- aGGCGCGCagaGCGCGAuCGGCUcgUCGa-- -3'
miRNA:   3'- gCCGCGCGg--CGUGCU-GCUGA--AGUacc -5'
27566 5' -57 NC_005882.1 + 19044 0.73 0.203124
Target:  5'- cCGGCGCGUuguCGCGCGGauggccgaugacgauCGgcGCUUCGUGGa -3'
miRNA:   3'- -GCCGCGCG---GCGUGCU---------------GC--UGAAGUACC- -5'
27566 5' -57 NC_005882.1 + 19807 0.67 0.453658
Target:  5'- gCGaGCGCGCCgGCGUGACGACgacg-GGc -3'
miRNA:   3'- -GC-CGCGCGG-CGUGCUGCUGaaguaCC- -5'
27566 5' -57 NC_005882.1 + 19854 0.69 0.36088
Target:  5'- cCGGCGCGCuCGCGCGugGcguGCU-CGc-- -3'
miRNA:   3'- -GCCGCGCG-GCGUGCugC---UGAaGUacc -5'
27566 5' -57 NC_005882.1 + 19873 0.71 0.289383
Target:  5'- -aGCGCGCCgaGCugGACGGCcgcaUUCGUGc -3'
miRNA:   3'- gcCGCGCGG--CGugCUGCUG----AAGUACc -5'
27566 5' -57 NC_005882.1 + 21190 0.68 0.443797
Target:  5'- cCGGCGCaCCGguCGACGAg--CAUGc -3'
miRNA:   3'- -GCCGCGcGGCguGCUGCUgaaGUACc -5'
27566 5' -57 NC_005882.1 + 21872 0.67 0.494236
Target:  5'- -cGCGCaGCCGgGCGACGAUggCAUc- -3'
miRNA:   3'- gcCGCG-CGGCgUGCUGCUGaaGUAcc -5'
27566 5' -57 NC_005882.1 + 21907 0.67 0.463636
Target:  5'- uCGGCGCGuuGCugGuCaGCUaUCcgGGc -3'
miRNA:   3'- -GCCGCGCggCGugCuGcUGA-AGuaCC- -5'
27566 5' -57 NC_005882.1 + 22469 0.68 0.400055
Target:  5'- gGGCGCGCgggcuuggucgacggCGCuGCGGcCGGCUUCA-GGu -3'
miRNA:   3'- gCCGCGCG---------------GCG-UGCU-GCUGAAGUaCC- -5'
27566 5' -57 NC_005882.1 + 22517 0.67 0.48393
Target:  5'- aCGGCGa-CCGCguucGCGGCGGuCUUCGguUGGu -3'
miRNA:   3'- -GCCGCgcGGCG----UGCUGCU-GAAGU--ACC- -5'
27566 5' -57 NC_005882.1 + 23329 0.66 0.547131
Target:  5'- aGGCGUacgcgGUCGCugGACGugUugaaguugaUCGUGc -3'
miRNA:   3'- gCCGCG-----CGGCGugCUGCugA---------AGUACc -5'
27566 5' -57 NC_005882.1 + 23410 0.68 0.414958
Target:  5'- aGGCcCGCCGCACGcgaugagaGCGGCUcCA-GGc -3'
miRNA:   3'- gCCGcGCGGCGUGC--------UGCUGAaGUaCC- -5'
27566 5' -57 NC_005882.1 + 23559 0.66 0.515138
Target:  5'- uGGgGCaaCCGCACGGCGGC---AUGGc -3'
miRNA:   3'- gCCgCGc-GGCGUGCUGCUGaagUACC- -5'
27566 5' -57 NC_005882.1 + 23615 0.7 0.327654
Target:  5'- -cGUGCGCCGUACGgGCGACgUCAUc- -3'
miRNA:   3'- gcCGCGCGGCGUGC-UGCUGaAGUAcc -5'
27566 5' -57 NC_005882.1 + 23752 0.75 0.140857
Target:  5'- aCGGCGCGCUGCu---CGGCUUCAaGGc -3'
miRNA:   3'- -GCCGCGCGGCGugcuGCUGAAGUaCC- -5'
27566 5' -57 NC_005882.1 + 25006 0.66 0.525724
Target:  5'- gCGGCGCGUCGaCGCGACaaagcaauccuGAUgUCA-GGc -3'
miRNA:   3'- -GCCGCGCGGC-GUGCUG-----------CUGaAGUaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.