Results 1 - 20 of 56 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27566 | 5' | -57 | NC_005882.1 | + | 1567 | 0.66 | 0.53639 |
Target: 5'- gGGCGuCGCCGCGCagcucGACGAUUaCuUGa -3' miRNA: 3'- gCCGC-GCGGCGUG-----CUGCUGAaGuACc -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 1741 | 0.66 | 0.53639 |
Target: 5'- -cGUGuCGCCcuuGCGCaGCGACUUCGUGa -3' miRNA: 3'- gcCGC-GCGG---CGUGcUGCUGAAGUACc -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 3273 | 0.68 | 0.443797 |
Target: 5'- cCGGcCGcCGUCGCGCGGCGAgaucuCUUCGg-- -3' miRNA: 3'- -GCC-GC-GCGGCGUGCUGCU-----GAAGUacc -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 3343 | 0.67 | 0.50464 |
Target: 5'- uGGCcgaagagaucuCGCCGCGCGACGGCggCcgGc -3' miRNA: 3'- gCCGc----------GCGGCGUGCUGCUGaaGuaCc -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 3375 | 0.66 | 0.525724 |
Target: 5'- gCGG-GCGCUGCGCGGCcugGGCUaccgCGUGc -3' miRNA: 3'- -GCCgCGCGGCGUGCUG---CUGAa---GUACc -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 3532 | 0.66 | 0.53639 |
Target: 5'- gGGCGUGCCGguCGucaccgcCGACgugaUCAaGGg -3' miRNA: 3'- gCCGCGCGGCguGCu------GCUGa---AGUaCC- -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 4597 | 0.67 | 0.453658 |
Target: 5'- aCGGCGUaugGCCGCGCagccucGACGACcUCGa-- -3' miRNA: 3'- -GCCGCG---CGGCGUG------CUGCUGaAGUacc -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 4876 | 0.71 | 0.296747 |
Target: 5'- gCGGCGCGaguucgaCGCGCGGCGcaACgaggUCGUGu -3' miRNA: 3'- -GCCGCGCg------GCGUGCUGC--UGa---AGUACc -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 6196 | 0.67 | 0.453658 |
Target: 5'- aGGCGCuuGCCGUucuuacGCGuCGACUcCAUGa -3' miRNA: 3'- gCCGCG--CGGCG------UGCuGCUGAaGUACc -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 6646 | 0.72 | 0.25471 |
Target: 5'- gCGGCGCGCCGUGCGucuCGGCg------ -3' miRNA: 3'- -GCCGCGCGGCGUGCu--GCUGaaguacc -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 6693 | 1.1 | 0.000409 |
Target: 5'- aCGGCGCGCCGCACGACGACUUCAUGGc -3' miRNA: 3'- -GCCGCGCGGCGUGCUGCUGAAGUACC- -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 9498 | 0.66 | 0.525724 |
Target: 5'- uGGCGCGCUggcggccgcaaGCACGACG-CgcCA-GGa -3' miRNA: 3'- gCCGCGCGG-----------CGUGCUGCuGaaGUaCC- -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 11892 | 0.67 | 0.494236 |
Target: 5'- aGGaCGaucaCCGCGCGGCGAag-CAUGGc -3' miRNA: 3'- gCC-GCgc--GGCGUGCUGCUgaaGUACC- -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 11975 | 0.67 | 0.453658 |
Target: 5'- gCGGCgGCGCCGagcaaCGCGACGACaaaggcgaUCA-GGa -3' miRNA: 3'- -GCCG-CGCGGC-----GUGCUGCUGa-------AGUaCC- -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 12122 | 0.7 | 0.327654 |
Target: 5'- aCGGCGU-CCGCGCGccaGCGGCUcuccUgGUGGa -3' miRNA: 3'- -GCCGCGcGGCGUGC---UGCUGA----AgUACC- -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 13276 | 0.75 | 0.144424 |
Target: 5'- aCGGCGCGCCuggaGCGCGauuuucuGCGAUUUCAggcGGa -3' miRNA: 3'- -GCCGCGCGG----CGUGC-------UGCUGAAGUa--CC- -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 14369 | 0.67 | 0.453658 |
Target: 5'- uGGUGCGCCGaCACGuCGcCcgUCAaGGu -3' miRNA: 3'- gCCGCGCGGC-GUGCuGCuGa-AGUaCC- -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 15037 | 0.69 | 0.369545 |
Target: 5'- -uGCGUGCCGaagaacaGCGGCGGCg-CAUGGc -3' miRNA: 3'- gcCGCGCGGCg------UGCUGCUGaaGUACC- -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 15512 | 0.68 | 0.434057 |
Target: 5'- cCGuaGCGCUGCAUcGCGACUUCugcgaGGu -3' miRNA: 3'- -GCcgCGCGGCGUGcUGCUGAAGua---CC- -5' |
|||||||
27566 | 5' | -57 | NC_005882.1 | + | 15650 | 0.67 | 0.453658 |
Target: 5'- aCGGCGCGCagguccgcgaGCACGuCGGCauccUUcgGGa -3' miRNA: 3'- -GCCGCGCGg---------CGUGCuGCUGa---AGuaCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home