miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27566 5' -57 NC_005882.1 + 31022 0.67 0.48393
Target:  5'- cCGGUGggaGCCGCGCuGCGAggUCGUGc -3'
miRNA:   3'- -GCCGCg--CGGCGUGcUGCUgaAGUACc -5'
27566 5' -57 NC_005882.1 + 15037 0.69 0.369545
Target:  5'- -uGCGUGCCGaagaacaGCGGCGGCg-CAUGGc -3'
miRNA:   3'- gcCGCGCGGCg------UGCUGCUGaaGUACC- -5'
27566 5' -57 NC_005882.1 + 3273 0.68 0.443797
Target:  5'- cCGGcCGcCGUCGCGCGGCGAgaucuCUUCGg-- -3'
miRNA:   3'- -GCC-GC-GCGGCGUGCUGCU-----GAAGUacc -5'
27566 5' -57 NC_005882.1 + 21190 0.68 0.443797
Target:  5'- cCGGCGCaCCGguCGACGAg--CAUGc -3'
miRNA:   3'- -GCCGCGcGGCguGCUGCUgaaGUACc -5'
27566 5' -57 NC_005882.1 + 6196 0.67 0.453658
Target:  5'- aGGCGCuuGCCGUucuuacGCGuCGACUcCAUGa -3'
miRNA:   3'- gCCGCG--CGGCG------UGCuGCUGAaGUACc -5'
27566 5' -57 NC_005882.1 + 14369 0.67 0.453658
Target:  5'- uGGUGCGCCGaCACGuCGcCcgUCAaGGu -3'
miRNA:   3'- gCCGCGCGGC-GUGCuGCuGa-AGUaCC- -5'
27566 5' -57 NC_005882.1 + 19807 0.67 0.453658
Target:  5'- gCGaGCGCGCCgGCGUGACGACgacg-GGc -3'
miRNA:   3'- -GC-CGCGCGG-CGUGCUGCUGaaguaCC- -5'
27566 5' -57 NC_005882.1 + 21907 0.67 0.463636
Target:  5'- uCGGCGCGuuGCugGuCaGCUaUCcgGGc -3'
miRNA:   3'- -GCCGCGCggCGugCuGcUGA-AGuaCC- -5'
27566 5' -57 NC_005882.1 + 17206 0.67 0.48393
Target:  5'- gCGGaCGCGCUGCAgGaACGGCUUg---- -3'
miRNA:   3'- -GCC-GCGCGGCGUgC-UGCUGAAguacc -5'
27566 5' -57 NC_005882.1 + 25579 0.69 0.36088
Target:  5'- uGGCGCGCgGCGCcGCG-CUgCGUGa -3'
miRNA:   3'- gCCGCGCGgCGUGcUGCuGAaGUACc -5'
27566 5' -57 NC_005882.1 + 23615 0.7 0.327654
Target:  5'- -cGUGCGCCGUACGgGCGACgUCAUc- -3'
miRNA:   3'- gcCGCGCGGCGUGC-UGCUGaAGUAcc -5'
27566 5' -57 NC_005882.1 + 27940 0.7 0.318923
Target:  5'- -cGCGCGCUGCAgGgcaagccGCGGCUgcaacgCAUGGg -3'
miRNA:   3'- gcCGCGCGGCGUgC-------UGCUGAa-----GUACC- -5'
27566 5' -57 NC_005882.1 + 23752 0.75 0.140857
Target:  5'- aCGGCGCGCUGCu---CGGCUUCAaGGc -3'
miRNA:   3'- -GCCGCGCGGCGugcuGCUGAAGUaCC- -5'
27566 5' -57 NC_005882.1 + 13276 0.75 0.144424
Target:  5'- aCGGCGCGCCuggaGCGCGauuuucuGCGAUUUCAggcGGa -3'
miRNA:   3'- -GCCGCGCGG----CGUGC-------UGCUGAAGUa--CC- -5'
27566 5' -57 NC_005882.1 + 27568 0.75 0.144825
Target:  5'- uCGGCGguCGCCGCGCGcGCGGCcgccggCAUGGc -3'
miRNA:   3'- -GCCGC--GCGGCGUGC-UGCUGaa----GUACC- -5'
27566 5' -57 NC_005882.1 + 29180 0.74 0.170843
Target:  5'- cCGGCGCGCCGUugcucgcguGCGGCcGCUUCGa-- -3'
miRNA:   3'- -GCCGCGCGGCG---------UGCUGcUGAAGUacc -5'
27566 5' -57 NC_005882.1 + 26563 0.74 0.190439
Target:  5'- -cGUGCGCCGCGCGgagcugGCGACcgucgCGUGGg -3'
miRNA:   3'- gcCGCGCGGCGUGC------UGCUGaa---GUACC- -5'
27566 5' -57 NC_005882.1 + 6646 0.72 0.25471
Target:  5'- gCGGCGCGCCGUGCGucuCGGCg------ -3'
miRNA:   3'- -GCCGCGCGGCGUGCu--GCUGaaguacc -5'
27566 5' -57 NC_005882.1 + 19873 0.71 0.289383
Target:  5'- -aGCGCGCCgaGCugGACGGCcgcaUUCGUGc -3'
miRNA:   3'- gcCGCGCGG--CGugCUGCUG----AAGUACc -5'
27566 5' -57 NC_005882.1 + 4876 0.71 0.296747
Target:  5'- gCGGCGCGaguucgaCGCGCGGCGcaACgaggUCGUGu -3'
miRNA:   3'- -GCCGCGCg------GCGUGCUGC--UGa---AGUACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.