miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27566 5' -57 NC_005882.1 + 6693 1.1 0.000409
Target:  5'- aCGGCGCGCCGCACGACGACUUCAUGGc -3'
miRNA:   3'- -GCCGCGCGGCGUGCUGCUGAAGUACC- -5'
27566 5' -57 NC_005882.1 + 17835 0.77 0.109397
Target:  5'- uGGCGCuGUCGCACGACGAgaUCAUc- -3'
miRNA:   3'- gCCGCG-CGGCGUGCUGCUgaAGUAcc -5'
27566 5' -57 NC_005882.1 + 23752 0.75 0.140857
Target:  5'- aCGGCGCGCUGCu---CGGCUUCAaGGc -3'
miRNA:   3'- -GCCGCGCGGCGugcuGCUGAAGUaCC- -5'
27566 5' -57 NC_005882.1 + 13276 0.75 0.144424
Target:  5'- aCGGCGCGCCuggaGCGCGauuuucuGCGAUUUCAggcGGa -3'
miRNA:   3'- -GCCGCGCGG----CGUGC-------UGCUGAAGUa--CC- -5'
27566 5' -57 NC_005882.1 + 27568 0.75 0.144825
Target:  5'- uCGGCGguCGCCGCGCGcGCGGCcgccggCAUGGc -3'
miRNA:   3'- -GCCGC--GCGGCGUGC-UGCUGaa----GUACC- -5'
27566 5' -57 NC_005882.1 + 29180 0.74 0.170843
Target:  5'- cCGGCGCGCCGUugcucgcguGCGGCcGCUUCGa-- -3'
miRNA:   3'- -GCCGCGCGGCG---------UGCUGcUGAAGUacc -5'
27566 5' -57 NC_005882.1 + 26563 0.74 0.190439
Target:  5'- -cGUGCGCCGCGCGgagcugGCGACcgucgCGUGGg -3'
miRNA:   3'- gcCGCGCGGCGUGC------UGCUGaa---GUACC- -5'
27566 5' -57 NC_005882.1 + 19044 0.73 0.203124
Target:  5'- cCGGCGCGUuguCGCGCGGauggccgaugacgauCGgcGCUUCGUGGa -3'
miRNA:   3'- -GCCGCGCG---GCGUGCU---------------GC--UGAAGUACC- -5'
27566 5' -57 NC_005882.1 + 18698 0.72 0.248198
Target:  5'- aGGCGCGCagaGCGCGAuCGGCUcgUCGa-- -3'
miRNA:   3'- gCCGCGCGg--CGUGCU-GCUGA--AGUacc -5'
27566 5' -57 NC_005882.1 + 6646 0.72 0.25471
Target:  5'- gCGGCGCGCCGUGCGucuCGGCg------ -3'
miRNA:   3'- -GCCGCGCGGCGUGCu--GCUGaaguacc -5'
27566 5' -57 NC_005882.1 + 19873 0.71 0.289383
Target:  5'- -aGCGCGCCgaGCugGACGGCcgcaUUCGUGc -3'
miRNA:   3'- gcCGCGCGG--CGugCUGCUG----AAGUACc -5'
27566 5' -57 NC_005882.1 + 4876 0.71 0.296747
Target:  5'- gCGGCGCGaguucgaCGCGCGGCGcaACgaggUCGUGu -3'
miRNA:   3'- -GCCGCGCg------GCGUGCUGC--UGa---AGUACc -5'
27566 5' -57 NC_005882.1 + 27940 0.7 0.318923
Target:  5'- -cGCGCGCUGCAgGgcaagccGCGGCUgcaacgCAUGGg -3'
miRNA:   3'- gcCGCGCGGCGUgC-------UGCUGAa-----GUACC- -5'
27566 5' -57 NC_005882.1 + 12122 0.7 0.327654
Target:  5'- aCGGCGU-CCGCGCGccaGCGGCUcuccUgGUGGa -3'
miRNA:   3'- -GCCGCGcGGCGUGC---UGCUGA----AgUACC- -5'
27566 5' -57 NC_005882.1 + 23615 0.7 0.327654
Target:  5'- -cGUGCGCCGUACGgGCGACgUCAUc- -3'
miRNA:   3'- gcCGCGCGGCGUGC-UGCUGaAGUAcc -5'
27566 5' -57 NC_005882.1 + 19854 0.69 0.36088
Target:  5'- cCGGCGCGCuCGCGCGugGcguGCU-CGc-- -3'
miRNA:   3'- -GCCGCGCG-GCGUGCugC---UGAaGUacc -5'
27566 5' -57 NC_005882.1 + 25579 0.69 0.36088
Target:  5'- uGGCGCGCgGCGCcGCG-CUgCGUGa -3'
miRNA:   3'- gCCGCGCGgCGUGcUGCuGAaGUACc -5'
27566 5' -57 NC_005882.1 + 15037 0.69 0.369545
Target:  5'- -uGCGUGCCGaagaacaGCGGCGGCg-CAUGGc -3'
miRNA:   3'- gcCGCGCGGCg------UGCUGCUGaaGUACC- -5'
27566 5' -57 NC_005882.1 + 29227 0.68 0.396383
Target:  5'- aCGGCGCGCCG-GCGuagcCGAuCUUCAg-- -3'
miRNA:   3'- -GCCGCGCGGCgUGCu---GCU-GAAGUacc -5'
27566 5' -57 NC_005882.1 + 22469 0.68 0.400055
Target:  5'- gGGCGCGCgggcuuggucgacggCGCuGCGGcCGGCUUCA-GGu -3'
miRNA:   3'- gCCGCGCG---------------GCG-UGCU-GCUGAAGUaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.