Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27566 | 5' | -57 | NC_005882.1 | + | 23559 | 0.66 | 0.515138 |
Target: 5'- uGGgGCaaCCGCACGGCGGC---AUGGc -3' miRNA: 3'- gCCgCGc-GGCGUGCUGCUGaagUACC- -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 28319 | 0.66 | 0.547131 |
Target: 5'- -uGCGCgGCCGC-CGGCGGCaccuUGGg -3' miRNA: 3'- gcCGCG-CGGCGuGCUGCUGaaguACC- -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 23329 | 0.66 | 0.547131 |
Target: 5'- aGGCGUacgcgGUCGCugGACGugUugaaguugaUCGUGc -3' miRNA: 3'- gCCGCG-----CGGCGugCUGCugA---------AGUACc -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 3532 | 0.66 | 0.53639 |
Target: 5'- gGGCGUGCCGguCGucaccgcCGACgugaUCAaGGg -3' miRNA: 3'- gCCGCGCGGCguGCu------GCUGa---AGUaCC- -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 3375 | 0.66 | 0.525724 |
Target: 5'- gCGG-GCGCUGCGCGGCcugGGCUaccgCGUGc -3' miRNA: 3'- -GCCgCGCGGCGUGCUG---CUGAa---GUACc -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 29362 | 0.66 | 0.515138 |
Target: 5'- uGGUGUGCuCGUACGcuuuggccuuGCGGCUUCGg-- -3' miRNA: 3'- gCCGCGCG-GCGUGC----------UGCUGAAGUacc -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 30576 | 0.66 | 0.547131 |
Target: 5'- uCGGcCGCGCgcaGCAUGAuuucCGACUUCGa-- -3' miRNA: 3'- -GCC-GCGCGg--CGUGCU----GCUGAAGUacc -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 25366 | 0.66 | 0.546054 |
Target: 5'- uCGGCGcCGCgcuuuccggcacgCGCACGACG-CUgaAUGGc -3' miRNA: 3'- -GCCGC-GCG-------------GCGUGCUGCuGAagUACC- -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 9498 | 0.66 | 0.525724 |
Target: 5'- uGGCGCGCUggcggccgcaaGCACGACG-CgcCA-GGa -3' miRNA: 3'- gCCGCGCGG-----------CGUGCUGCuGaaGUaCC- -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 32729 | 0.66 | 0.547131 |
Target: 5'- gCGGCGuUGCUGCGC-ACGACgu--UGGc -3' miRNA: 3'- -GCCGC-GCGGCGUGcUGCUGaaguACC- -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 1567 | 0.66 | 0.53639 |
Target: 5'- gGGCGuCGCCGCGCagcucGACGAUUaCuUGa -3' miRNA: 3'- gCCGC-GCGGCGUG-----CUGCUGAaGuACc -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 25006 | 0.66 | 0.525724 |
Target: 5'- gCGGCGCGUCGaCGCGACaaagcaauccuGAUgUCA-GGc -3' miRNA: 3'- -GCCGCGCGGC-GUGCUG-----------CUGaAGUaCC- -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 1741 | 0.66 | 0.53639 |
Target: 5'- -cGUGuCGCCcuuGCGCaGCGACUUCGUGa -3' miRNA: 3'- gcCGC-GCGG---CGUGcUGCUGAAGUACc -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 17206 | 0.67 | 0.48393 |
Target: 5'- gCGGaCGCGCUGCAgGaACGGCUUg---- -3' miRNA: 3'- -GCC-GCGCGGCGUgC-UGCUGAAguacc -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 17164 | 0.67 | 0.463636 |
Target: 5'- gCGGCGCGaccagcgcCUGCGCGuCGGCaUUCA-GGu -3' miRNA: 3'- -GCCGCGC--------GGCGUGCuGCUG-AAGUaCC- -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 26199 | 0.67 | 0.463636 |
Target: 5'- cCGGCGC-CUuCGCGGcCGACUUCGaGGc -3' miRNA: 3'- -GCCGCGcGGcGUGCU-GCUGAAGUaCC- -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 15650 | 0.67 | 0.453658 |
Target: 5'- aCGGCGCGCagguccgcgaGCACGuCGGCauccUUcgGGa -3' miRNA: 3'- -GCCGCGCGg---------CGUGCuGCUGa---AGuaCC- -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 27632 | 0.67 | 0.463636 |
Target: 5'- cCGGCG-GCCGCGCGcGCGGCg------ -3' miRNA: 3'- -GCCGCgCGGCGUGC-UGCUGaaguacc -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 11975 | 0.67 | 0.453658 |
Target: 5'- gCGGCgGCGCCGagcaaCGCGACGACaaaggcgaUCA-GGa -3' miRNA: 3'- -GCCG-CGCGGC-----GUGCUGCUGa-------AGUaCC- -5' |
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27566 | 5' | -57 | NC_005882.1 | + | 29855 | 0.67 | 0.463636 |
Target: 5'- cCGGUcaaGCGCCGCGCG-UGcCUUCGUc- -3' miRNA: 3'- -GCCG---CGCGGCGUGCuGCuGAAGUAcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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