miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27566 5' -57 NC_005882.1 + 32729 0.66 0.547131
Target:  5'- gCGGCGuUGCUGCGC-ACGACgu--UGGc -3'
miRNA:   3'- -GCCGC-GCGGCGUGcUGCUGaaguACC- -5'
27566 5' -57 NC_005882.1 + 31022 0.67 0.48393
Target:  5'- cCGGUGggaGCCGCGCuGCGAggUCGUGc -3'
miRNA:   3'- -GCCGCg--CGGCGUGcUGCUgaAGUACc -5'
27566 5' -57 NC_005882.1 + 30576 0.66 0.547131
Target:  5'- uCGGcCGCGCgcaGCAUGAuuucCGACUUCGa-- -3'
miRNA:   3'- -GCC-GCGCGg--CGUGCU----GCUGAAGUacc -5'
27566 5' -57 NC_005882.1 + 30046 0.67 0.494236
Target:  5'- aCGGCgaGCGCCGaGCGcuucagcuCGACUUCGguuUGGu -3'
miRNA:   3'- -GCCG--CGCGGCgUGCu-------GCUGAAGU---ACC- -5'
27566 5' -57 NC_005882.1 + 29855 0.67 0.463636
Target:  5'- cCGGUcaaGCGCCGCGCG-UGcCUUCGUc- -3'
miRNA:   3'- -GCCG---CGCGGCGUGCuGCuGAAGUAcc -5'
27566 5' -57 NC_005882.1 + 29362 0.66 0.515138
Target:  5'- uGGUGUGCuCGUACGcuuuggccuuGCGGCUUCGg-- -3'
miRNA:   3'- gCCGCGCG-GCGUGC----------UGCUGAAGUacc -5'
27566 5' -57 NC_005882.1 + 29227 0.68 0.396383
Target:  5'- aCGGCGCGCCG-GCGuagcCGAuCUUCAg-- -3'
miRNA:   3'- -GCCGCGCGGCgUGCu---GCU-GAAGUacc -5'
27566 5' -57 NC_005882.1 + 29180 0.74 0.170843
Target:  5'- cCGGCGCGCCGUugcucgcguGCGGCcGCUUCGa-- -3'
miRNA:   3'- -GCCGCGCGGCG---------UGCUGcUGAAGUacc -5'
27566 5' -57 NC_005882.1 + 28319 0.66 0.547131
Target:  5'- -uGCGCgGCCGC-CGGCGGCaccuUGGg -3'
miRNA:   3'- gcCGCG-CGGCGuGCUGCUGaaguACC- -5'
27566 5' -57 NC_005882.1 + 27940 0.7 0.318923
Target:  5'- -cGCGCGCUGCAgGgcaagccGCGGCUgcaacgCAUGGg -3'
miRNA:   3'- gcCGCGCGGCGUgC-------UGCUGAa-----GUACC- -5'
27566 5' -57 NC_005882.1 + 27632 0.67 0.463636
Target:  5'- cCGGCG-GCCGCGCGcGCGGCg------ -3'
miRNA:   3'- -GCCGCgCGGCGUGC-UGCUGaaguacc -5'
27566 5' -57 NC_005882.1 + 27568 0.75 0.144825
Target:  5'- uCGGCGguCGCCGCGCGcGCGGCcgccggCAUGGc -3'
miRNA:   3'- -GCCGC--GCGGCGUGC-UGCUGaa----GUACC- -5'
27566 5' -57 NC_005882.1 + 26563 0.74 0.190439
Target:  5'- -cGUGCGCCGCGCGgagcugGCGACcgucgCGUGGg -3'
miRNA:   3'- gcCGCGCGGCGUGC------UGCUGaa---GUACC- -5'
27566 5' -57 NC_005882.1 + 26199 0.67 0.463636
Target:  5'- cCGGCGC-CUuCGCGGcCGACUUCGaGGc -3'
miRNA:   3'- -GCCGCGcGGcGUGCU-GCUGAAGUaCC- -5'
27566 5' -57 NC_005882.1 + 25579 0.69 0.36088
Target:  5'- uGGCGCGCgGCGCcGCG-CUgCGUGa -3'
miRNA:   3'- gCCGCGCGgCGUGcUGCuGAaGUACc -5'
27566 5' -57 NC_005882.1 + 25366 0.66 0.546054
Target:  5'- uCGGCGcCGCgcuuuccggcacgCGCACGACG-CUgaAUGGc -3'
miRNA:   3'- -GCCGC-GCG-------------GCGUGCUGCuGAagUACC- -5'
27566 5' -57 NC_005882.1 + 25006 0.66 0.525724
Target:  5'- gCGGCGCGUCGaCGCGACaaagcaauccuGAUgUCA-GGc -3'
miRNA:   3'- -GCCGCGCGGC-GUGCUG-----------CUGaAGUaCC- -5'
27566 5' -57 NC_005882.1 + 23752 0.75 0.140857
Target:  5'- aCGGCGCGCUGCu---CGGCUUCAaGGc -3'
miRNA:   3'- -GCCGCGCGGCGugcuGCUGAAGUaCC- -5'
27566 5' -57 NC_005882.1 + 23615 0.7 0.327654
Target:  5'- -cGUGCGCCGUACGgGCGACgUCAUc- -3'
miRNA:   3'- gcCGCGCGGCGUGC-UGCUGaAGUAcc -5'
27566 5' -57 NC_005882.1 + 23559 0.66 0.515138
Target:  5'- uGGgGCaaCCGCACGGCGGC---AUGGc -3'
miRNA:   3'- gCCgCGc-GGCGUGCUGCUGaagUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.