miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27567 5' -52.8 NC_005882.1 + 6980 1.09 0.001219
Target:  5'- cCGGCGAGCUGAAGCUCGACGAUAUCGc -3'
miRNA:   3'- -GCCGCUCGACUUCGAGCUGCUAUAGC- -5'
27567 5' -52.8 NC_005882.1 + 32207 0.76 0.2278
Target:  5'- aCGGCgcgacuGAGCUGgcGCggGACGAUAUCGc -3'
miRNA:   3'- -GCCG------CUCGACuuCGagCUGCUAUAGC- -5'
27567 5' -52.8 NC_005882.1 + 24809 0.73 0.346533
Target:  5'- uCGGCGAGgUcGAGUUCGcCGAUGUCu -3'
miRNA:   3'- -GCCGCUCgAcUUCGAGCuGCUAUAGc -5'
27567 5' -52.8 NC_005882.1 + 4719 0.72 0.410858
Target:  5'- -cGCGGGCcgGuAAGCUCGGCGAcgAUCGc -3'
miRNA:   3'- gcCGCUCGa-C-UUCGAGCUGCUa-UAGC- -5'
27567 5' -52.8 NC_005882.1 + 23148 0.72 0.414752
Target:  5'- uCGGuCGAGCUGGaggcgauggccguccAGCUCGggGCGAUcgCGu -3'
miRNA:   3'- -GCC-GCUCGACU---------------UCGAGC--UGCUAuaGC- -5'
27567 5' -52.8 NC_005882.1 + 25561 0.71 0.4611
Target:  5'- aGGCGGucguaCUGGccgcgcAGCUCGGCGAUGUUGc -3'
miRNA:   3'- gCCGCUc----GACU------UCGAGCUGCUAUAGC- -5'
27567 5' -52.8 NC_005882.1 + 6157 0.71 0.471535
Target:  5'- cCGGCGAGCUGcGGC-CGuugucCGAUAgcgCGa -3'
miRNA:   3'- -GCCGCUCGACuUCGaGCu----GCUAUa--GC- -5'
27567 5' -52.8 NC_005882.1 + 19591 0.71 0.471535
Target:  5'- uCGGCGAGCUGcuGCUUGAgcugGGUGUUu -3'
miRNA:   3'- -GCCGCUCGACuuCGAGCUg---CUAUAGc -5'
27567 5' -52.8 NC_005882.1 + 22715 0.7 0.492756
Target:  5'- cCGGCGAGCUGcGGGC-CGAacugcgccgcguCGAcGUCGg -3'
miRNA:   3'- -GCCGCUCGAC-UUCGaGCU------------GCUaUAGC- -5'
27567 5' -52.8 NC_005882.1 + 32455 0.7 0.503529
Target:  5'- gGGCGAggacgGCUGGAGuCUCGcCGA-GUCGg -3'
miRNA:   3'- gCCGCU-----CGACUUC-GAGCuGCUaUAGC- -5'
27567 5' -52.8 NC_005882.1 + 24359 0.7 0.525374
Target:  5'- aCGGCGAggaaguGCUGGAGCUgGAC--UAUCu -3'
miRNA:   3'- -GCCGCU------CGACUUCGAgCUGcuAUAGc -5'
27567 5' -52.8 NC_005882.1 + 4809 0.7 0.525374
Target:  5'- aCGGCGuaccGCaaGAgcAGCUCGACGcgAUCGu -3'
miRNA:   3'- -GCCGCu---CGa-CU--UCGAGCUGCuaUAGC- -5'
27567 5' -52.8 NC_005882.1 + 10178 0.7 0.53643
Target:  5'- gGGUGAGCUGGAGUUgCGuCGucagGUCa -3'
miRNA:   3'- gCCGCUCGACUUCGA-GCuGCua--UAGc -5'
27567 5' -52.8 NC_005882.1 + 30046 0.69 0.54645
Target:  5'- aCGGCGAGCgccGAgcgcuucAGCUCGACu---UCGg -3'
miRNA:   3'- -GCCGCUCGa--CU-------UCGAGCUGcuauAGC- -5'
27567 5' -52.8 NC_005882.1 + 7322 0.69 0.547567
Target:  5'- aCGGCGAGCUGAuucgcuGCgUCGACcauugCGg -3'
miRNA:   3'- -GCCGCUCGACUu-----CG-AGCUGcuauaGC- -5'
27567 5' -52.8 NC_005882.1 + 17931 0.69 0.558775
Target:  5'- cCGGCGAGCUgcgcGAGGUcgCGACGuuccgcacGUCGa -3'
miRNA:   3'- -GCCGCUCGA----CUUCGa-GCUGCua------UAGC- -5'
27567 5' -52.8 NC_005882.1 + 27960 0.69 0.558775
Target:  5'- gCGGCugcaacgcauGGGCgacAAGCUCGACGAgauUCGg -3'
miRNA:   3'- -GCCG----------CUCGac-UUCGAGCUGCUau-AGC- -5'
27567 5' -52.8 NC_005882.1 + 3764 0.69 0.558775
Target:  5'- uGGuCGAGCUGGccccGCUCGACGGc---- -3'
miRNA:   3'- gCC-GCUCGACUu---CGAGCUGCUauagc -5'
27567 5' -52.8 NC_005882.1 + 24896 0.69 0.563277
Target:  5'- uCGGCG-GCUGAucGCUgggcgcccgcauuucCGGCGGUAUCc -3'
miRNA:   3'- -GCCGCuCGACUu-CGA---------------GCUGCUAUAGc -5'
27567 5' -52.8 NC_005882.1 + 19762 0.69 0.570047
Target:  5'- uCGGCGAGCUgccGAAGgUCGuCGAauUUGg -3'
miRNA:   3'- -GCCGCUCGA---CUUCgAGCuGCUauAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.