miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27567 5' -52.8 NC_005882.1 + 540 0.66 0.728914
Target:  5'- gCGGCGAcaaccaugccgaGCUGGcacggaAGUUCGGCG-UGUCa -3'
miRNA:   3'- -GCCGCU------------CGACU------UCGAGCUGCuAUAGc -5'
27567 5' -52.8 NC_005882.1 + 2434 0.67 0.695444
Target:  5'- uGGuCGAGCUGAAaGCccgaauuuUCGGUGAUAUCu -3'
miRNA:   3'- gCC-GCUCGACUU-CG--------AGCUGCUAUAGc -5'
27567 5' -52.8 NC_005882.1 + 3764 0.69 0.558775
Target:  5'- uGGuCGAGCUGGccccGCUCGACGGc---- -3'
miRNA:   3'- gCC-GCUCGACUu---CGAGCUGCUauagc -5'
27567 5' -52.8 NC_005882.1 + 4719 0.72 0.410858
Target:  5'- -cGCGGGCcgGuAAGCUCGGCGAcgAUCGc -3'
miRNA:   3'- gcCGCUCGa-C-UUCGAGCUGCUa-UAGC- -5'
27567 5' -52.8 NC_005882.1 + 4809 0.7 0.525374
Target:  5'- aCGGCGuaccGCaaGAgcAGCUCGACGcgAUCGu -3'
miRNA:   3'- -GCCGCu---CGa-CU--UCGAGCUGCuaUAGC- -5'
27567 5' -52.8 NC_005882.1 + 5753 0.66 0.739878
Target:  5'- aCGGUGuGCcacgcauucUGAuGCUCGACGccggAUCGg -3'
miRNA:   3'- -GCCGCuCG---------ACUuCGAGCUGCua--UAGC- -5'
27567 5' -52.8 NC_005882.1 + 6157 0.71 0.471535
Target:  5'- cCGGCGAGCUGcGGC-CGuugucCGAUAgcgCGa -3'
miRNA:   3'- -GCCGCUCGACuUCGaGCu----GCUAUa--GC- -5'
27567 5' -52.8 NC_005882.1 + 6980 1.09 0.001219
Target:  5'- cCGGCGAGCUGAAGCUCGACGAUAUCGc -3'
miRNA:   3'- -GCCGCUCGACUUCGAGCUGCUAUAGC- -5'
27567 5' -52.8 NC_005882.1 + 7322 0.69 0.547567
Target:  5'- aCGGCGAGCUGAuucgcuGCgUCGACcauugCGg -3'
miRNA:   3'- -GCCGCUCGACUu-----CG-AGCUGcuauaGC- -5'
27567 5' -52.8 NC_005882.1 + 10178 0.7 0.53643
Target:  5'- gGGUGAGCUGGAGUUgCGuCGucagGUCa -3'
miRNA:   3'- gCCGCUCGACUUCGA-GCuGCua--UAGc -5'
27567 5' -52.8 NC_005882.1 + 12574 0.66 0.772013
Target:  5'- uGGCG-GCUGgcGCggucgcuuucuUCGGCGGcUAUCa -3'
miRNA:   3'- gCCGCuCGACuuCG-----------AGCUGCU-AUAGc -5'
27567 5' -52.8 NC_005882.1 + 13072 0.68 0.604156
Target:  5'- gCGGCG-GCUGGcgucgacguGGUgggCGAgGAUGUCGu -3'
miRNA:   3'- -GCCGCuCGACU---------UCGa--GCUgCUAUAGC- -5'
27567 5' -52.8 NC_005882.1 + 13955 0.69 0.570047
Target:  5'- aGGCGAGCacgGAAGC-CGACGc-AUCc -3'
miRNA:   3'- gCCGCUCGa--CUUCGaGCUGCuaUAGc -5'
27567 5' -52.8 NC_005882.1 + 14748 0.68 0.61559
Target:  5'- uCGGCGAGCUGcucaAGGC-CG-CGAUggCGc -3'
miRNA:   3'- -GCCGCUCGAC----UUCGaGCuGCUAuaGC- -5'
27567 5' -52.8 NC_005882.1 + 17832 0.66 0.772013
Target:  5'- uGGUGGcGCUGucGCaCGACGAgAUCa -3'
miRNA:   3'- gCCGCU-CGACuuCGaGCUGCUaUAGc -5'
27567 5' -52.8 NC_005882.1 + 17931 0.69 0.558775
Target:  5'- cCGGCGAGCUgcgcGAGGUcgCGACGuuccgcacGUCGa -3'
miRNA:   3'- -GCCGCUCGA----CUUCGa-GCUGCua------UAGC- -5'
27567 5' -52.8 NC_005882.1 + 18328 0.68 0.61559
Target:  5'- aCGGCGAGCUGAccgcGGC-CG-CGucgcGUCGc -3'
miRNA:   3'- -GCCGCUCGACU----UCGaGCuGCua--UAGC- -5'
27567 5' -52.8 NC_005882.1 + 18548 0.66 0.770963
Target:  5'- uGGCGAGCugcaaccUGAAGCggUCGAgcCGGUGcUCa -3'
miRNA:   3'- gCCGCUCG-------ACUUCG--AGCU--GCUAU-AGc -5'
27567 5' -52.8 NC_005882.1 + 19591 0.71 0.471535
Target:  5'- uCGGCGAGCUGcuGCUUGAgcugGGUGUUu -3'
miRNA:   3'- -GCCGCUCGACuuCGAGCUg---CUAUAGc -5'
27567 5' -52.8 NC_005882.1 + 19762 0.69 0.570047
Target:  5'- uCGGCGAGCUgccGAAGgUCGuCGAauUUGg -3'
miRNA:   3'- -GCCGCUCGA---CUUCgAGCuGCUauAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.