miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27569 3' -50.5 NC_005882.1 + 362 0.67 0.829455
Target:  5'- uCAGACUUCUCcgcaGCCGUCGAuguaauGCcgCAg -3'
miRNA:   3'- cGUUUGGAGAG----CGGCAGCU------UGuaGUg -5'
27569 3' -50.5 NC_005882.1 + 1346 0.71 0.561943
Target:  5'- aGCGGGCCg--UGCCGcUCGAugucuGCAUCACc -3'
miRNA:   3'- -CGUUUGGagaGCGGC-AGCU-----UGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 1953 0.7 0.654978
Target:  5'- uCGAGCaCUUUCGCUGgccgCGAGCGucUCGCg -3'
miRNA:   3'- cGUUUG-GAGAGCGGCa---GCUUGU--AGUG- -5'
27569 3' -50.5 NC_005882.1 + 2135 0.7 0.631628
Target:  5'- cGC-GugCUCgcgcugCGCCGaUUGGACAUCACc -3'
miRNA:   3'- -CGuUugGAGa-----GCGGC-AGCUUGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 2260 0.67 0.819761
Target:  5'- uGCAGGCCg--CGaaGUCGAugAUCGa -3'
miRNA:   3'- -CGUUUGGagaGCggCAGCUugUAGUg -5'
27569 3' -50.5 NC_005882.1 + 2885 0.66 0.838916
Target:  5'- aCAAGCUUCcccaUCGCCcgaugaucgaaGUCGAAC-UCGCg -3'
miRNA:   3'- cGUUUGGAG----AGCGG-----------CAGCUUGuAGUG- -5'
27569 3' -50.5 NC_005882.1 + 4956 0.71 0.585023
Target:  5'- gGCAcggaacacGACCUCguugCGCCGcgcgUCGAAC-UCGCg -3'
miRNA:   3'- -CGU--------UUGGAGa---GCGGC----AGCUUGuAGUG- -5'
27569 3' -50.5 NC_005882.1 + 5668 0.67 0.799718
Target:  5'- ---cGCCgugUUCGCCGauccggcgUCGAGCAUCAg -3'
miRNA:   3'- cguuUGGa--GAGCGGC--------AGCUUGUAGUg -5'
27569 3' -50.5 NC_005882.1 + 5921 0.67 0.809844
Target:  5'- cGCAGGCCgUUCGCa--CGGGCAUCGg -3'
miRNA:   3'- -CGUUUGGaGAGCGgcaGCUUGUAGUg -5'
27569 3' -50.5 NC_005882.1 + 7324 0.66 0.874209
Target:  5'- gGCGAGCUgauUCGCugCGUCGAcCAUUGCg -3'
miRNA:   3'- -CGUUUGGag-AGCG--GCAGCUuGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 7797 0.71 0.585023
Target:  5'- cGCGAACCccaUCGCC-UCaAGCGUCGCg -3'
miRNA:   3'- -CGUUUGGag-AGCGGcAGcUUGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 7894 1.08 0.002467
Target:  5'- aCGAACCUCUCGCCGUCGAACAUCACg -3'
miRNA:   3'- cGUUUGGAGAGCGGCAGCUUGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 10412 0.75 0.3914
Target:  5'- ---cACCgggCUUGCCGUCcGACGUCACa -3'
miRNA:   3'- cguuUGGa--GAGCGGCAGcUUGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 12119 0.68 0.768205
Target:  5'- uCAuGCC-CUCGaCCGUCGAcuGgAUCGCg -3'
miRNA:   3'- cGUuUGGaGAGC-GGCAGCU--UgUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 12662 0.68 0.746386
Target:  5'- cGCAGACggCgcgcgcgaUGCCGUCGAACAagCGCg -3'
miRNA:   3'- -CGUUUGgaGa-------GCGGCAGCUUGUa-GUG- -5'
27569 3' -50.5 NC_005882.1 + 12791 0.67 0.819761
Target:  5'- gGCGAACaggUCGCCGgCGAGCGcCGCc -3'
miRNA:   3'- -CGUUUGgagAGCGGCaGCUUGUaGUG- -5'
27569 3' -50.5 NC_005882.1 + 14787 0.69 0.689793
Target:  5'- cCGAGCUgCUCGUggaacgcugccuCGUCGAugAUCACg -3'
miRNA:   3'- cGUUUGGaGAGCG------------GCAGCUugUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 14914 0.71 0.585023
Target:  5'- -aGGGCUUCUUGCCGgaaCGGACGUC-Cg -3'
miRNA:   3'- cgUUUGGAGAGCGGCa--GCUUGUAGuG- -5'
27569 3' -50.5 NC_005882.1 + 15274 0.71 0.585023
Target:  5'- aGCGGGCgUCgaccgggagCGCCGUgagcagcgggcCGAGCGUCGCu -3'
miRNA:   3'- -CGUUUGgAGa--------GCGGCA-----------GCUUGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 15597 0.68 0.735273
Target:  5'- cGCGGACCUgcgCGCCGUacaGGuCAUCAa -3'
miRNA:   3'- -CGUUUGGAga-GCGGCAg--CUuGUAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.