miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27569 3' -50.5 NC_005882.1 + 18484 0.72 0.527823
Target:  5'- gGCAAGCCggUCGCgGaUUGAAgGUCACg -3'
miRNA:   3'- -CGUUUGGagAGCGgC-AGCUUgUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 7324 0.66 0.874209
Target:  5'- gGCGAGCUgauUCGCugCGUCGAcCAUUGCg -3'
miRNA:   3'- -CGUUUGGag-AGCG--GCAGCUuGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 25396 0.66 0.856208
Target:  5'- cGCugaauGGCCUCggccgcgUCGCCGaCGAGCugcgCGCg -3'
miRNA:   3'- -CGu----UUGGAG-------AGCGGCaGCUUGua--GUG- -5'
27569 3' -50.5 NC_005882.1 + 5921 0.67 0.809844
Target:  5'- cGCAGGCCgUUCGCa--CGGGCAUCGg -3'
miRNA:   3'- -CGUUUGGaGAGCGgcaGCUUGUAGUg -5'
27569 3' -50.5 NC_005882.1 + 5668 0.67 0.799718
Target:  5'- ---cGCCgugUUCGCCGauccggcgUCGAGCAUCAg -3'
miRNA:   3'- cguuUGGa--GAGCGGC--------AGCUUGUAGUg -5'
27569 3' -50.5 NC_005882.1 + 34482 0.68 0.778885
Target:  5'- aGCGGGCCgucggCUCgGUCGUCGGAUcgaugCGCa -3'
miRNA:   3'- -CGUUUGGa----GAG-CGGCAGCUUGua---GUG- -5'
27569 3' -50.5 NC_005882.1 + 12119 0.68 0.768205
Target:  5'- uCAuGCC-CUCGaCCGUCGAcuGgAUCGCg -3'
miRNA:   3'- cGUuUGGaGAGC-GGCAGCU--UgUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 28647 0.68 0.757367
Target:  5'- cGCGGGCCagcUCUCGaCGgCGAGCAgCGCg -3'
miRNA:   3'- -CGUUUGG---AGAGCgGCaGCUUGUaGUG- -5'
27569 3' -50.5 NC_005882.1 + 12662 0.68 0.746386
Target:  5'- cGCAGACggCgcgcgcgaUGCCGUCGAACAagCGCg -3'
miRNA:   3'- -CGUUUGgaGa-------GCGGCAGCUUGUa-GUG- -5'
27569 3' -50.5 NC_005882.1 + 15597 0.68 0.735273
Target:  5'- cGCGGACCUgcgCGCCGUacaGGuCAUCAa -3'
miRNA:   3'- -CGUUUGGAga-GCGGCAg--CUuGUAGUg -5'
27569 3' -50.5 NC_005882.1 + 17650 0.69 0.70129
Target:  5'- gGCGGGCCgCUaCGCCGagcaaauggCGAACGUCGa -3'
miRNA:   3'- -CGUUUGGaGA-GCGGCa--------GCUUGUAGUg -5'
27569 3' -50.5 NC_005882.1 + 7797 0.71 0.585023
Target:  5'- cGCGAACCccaUCGCC-UCaAGCGUCGCg -3'
miRNA:   3'- -CGUUUGGag-AGCGGcAGcUUGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 1346 0.71 0.561943
Target:  5'- aGCGGGCCg--UGCCGcUCGAugucuGCAUCACc -3'
miRNA:   3'- -CGUUUGGagaGCGGC-AGCU-----UGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 21784 0.7 0.619948
Target:  5'- cGCGcggGACCUUcauuUCGCCcggcUCGGGCGUCGCc -3'
miRNA:   3'- -CGU---UUGGAG----AGCGGc---AGCUUGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 26288 0.71 0.585023
Target:  5'- cGCcGGCCuUCUUGUaggCGUCGAugGUCGCc -3'
miRNA:   3'- -CGuUUGG-AGAGCG---GCAGCUugUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 4956 0.71 0.585023
Target:  5'- gGCAcggaacacGACCUCguugCGCCGcgcgUCGAAC-UCGCg -3'
miRNA:   3'- -CGU--------UUGGAGa---GCGGC----AGCUUGuAGUG- -5'
27569 3' -50.5 NC_005882.1 + 15274 0.71 0.585023
Target:  5'- aGCGGGCgUCgaccgggagCGCCGUgagcagcgggcCGAGCGUCGCu -3'
miRNA:   3'- -CGUUUGgAGa--------GCGGCA-----------GCUUGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 14914 0.71 0.585023
Target:  5'- -aGGGCUUCUUGCCGgaaCGGACGUC-Cg -3'
miRNA:   3'- cgUUUGGAGAGCGGCa--GCUUGUAGuG- -5'
27569 3' -50.5 NC_005882.1 + 10412 0.75 0.3914
Target:  5'- ---cACCgggCUUGCCGUCcGACGUCACa -3'
miRNA:   3'- cguuUGGa--GAGCGGCAGcUUGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 25273 0.66 0.857092
Target:  5'- cGCGAuuGCCggcgucgugCUCGCCGUCuGGCuguUCAUc -3'
miRNA:   3'- -CGUU--UGGa--------GAGCGGCAGcUUGu--AGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.