Results 1 - 20 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 679 | 0.69 | 0.330057 |
Target: 5'- gGCGCCGaccaggcgaacCAGcUCGGGCGcgagAUUGC-CGACc -3' miRNA: 3'- -UGCGGC-----------GUC-AGCCCGU----UAACGaGCUG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 1337 | 0.68 | 0.410479 |
Target: 5'- aACGCCuGgAG-CGGGCcGUgccGCUCGAUg -3' miRNA: 3'- -UGCGG-CgUCaGCCCGuUAa--CGAGCUG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 1552 | 0.68 | 0.380515 |
Target: 5'- gACGCCcaucGCA-UCGGGCGucgccgcgcaGCUCGACg -3' miRNA: 3'- -UGCGG----CGUcAGCCCGUuaa-------CGAGCUG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 4219 | 0.69 | 0.321872 |
Target: 5'- uCGUCGCGGaaUCGGGCGGcgGCaaGACg -3' miRNA: 3'- uGCGGCGUC--AGCCCGUUaaCGagCUG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 5322 | 0.68 | 0.400958 |
Target: 5'- uCGUCGguGcCGGGCGucaUGgUCGGCg -3' miRNA: 3'- uGCGGCguCaGCCCGUua-ACgAGCUG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 5837 | 0.71 | 0.235436 |
Target: 5'- uACGUCauggguGCGGaaUCGGGCGAgaccucUGCUCGACg -3' miRNA: 3'- -UGCGG------CGUC--AGCCCGUUa-----ACGAGCUG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 8157 | 1.09 | 0.000405 |
Target: 5'- aACGCCGCAGUCGGGCAAUUGCUCGACu -3' miRNA: 3'- -UGCGGCGUCAGCCCGUUAACGAGCUG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 8594 | 0.69 | 0.321872 |
Target: 5'- cACGUguggaCGCuGUCGGGCAGacgaUGCuUCGACu -3' miRNA: 3'- -UGCG-----GCGuCAGCCCGUUa---ACG-AGCUG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 8783 | 0.71 | 0.239894 |
Target: 5'- uCGCCGCcccgugccuguaucGGaUCGGGCAGUUGg-CGACg -3' miRNA: 3'- uGCGGCG--------------UC-AGCCCGUUAACgaGCUG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 11705 | 0.66 | 0.522479 |
Target: 5'- gACGagaCuCAGUuuguagagggcgaCGGGCAGUUGCUgCGGCg -3' miRNA: 3'- -UGCg--GcGUCA-------------GCCCGUUAACGA-GCUG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 12008 | 0.71 | 0.241826 |
Target: 5'- aGCGCCuCGG-CGGGCAcUUGCgCGGCc -3' miRNA: 3'- -UGCGGcGUCaGCCCGUuAACGaGCUG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 13659 | 0.67 | 0.429934 |
Target: 5'- -gGCCGCuGGUgGGGCGAUcucacgcGCUaCGGCg -3' miRNA: 3'- ugCGGCG-UCAgCCCGUUAa------CGA-GCUG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 14773 | 0.66 | 0.501999 |
Target: 5'- gGCGCUGCugauGUgGGGCGGUcagGUucacaucauuUCGACg -3' miRNA: 3'- -UGCGGCGu---CAgCCCGUUAa--CG----------AGCUG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 15587 | 0.69 | 0.321872 |
Target: 5'- aACGCCGCcuucaCGGGCGGcaugUGCUCG-Cg -3' miRNA: 3'- -UGCGGCGuca--GCCCGUUa---ACGAGCuG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 15688 | 0.69 | 0.346884 |
Target: 5'- gACGCCGCcGUa--GCGGUUGCUCuGGCg -3' miRNA: 3'- -UGCGGCGuCAgccCGUUAACGAG-CUG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 21087 | 0.68 | 0.364316 |
Target: 5'- gGCGUgugCGCAGcCGGcGCGAaggcGCUCGGCg -3' miRNA: 3'- -UGCG---GCGUCaGCC-CGUUaa--CGAGCUG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 21212 | 0.67 | 0.449921 |
Target: 5'- gACGCCGagcaGGUUGaccGGCGcUUGCUCGcCg -3' miRNA: 3'- -UGCGGCg---UCAGC---CCGUuAACGAGCuG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 21465 | 0.66 | 0.512735 |
Target: 5'- uGCGCCGUAGUCGguGGUcGUgucGUUCGuCa -3' miRNA: 3'- -UGCGGCGUCAGC--CCGuUAa--CGAGCuG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 21874 | 0.69 | 0.338394 |
Target: 5'- gACG-CGCAGcCGGGCGAcgaugGCaUCGACc -3' miRNA: 3'- -UGCgGCGUCaGCCCGUUaa---CG-AGCUG- -5' |
|||||||
27571 | 3' | -56.6 | NC_005882.1 | + | 22025 | 0.68 | 0.410479 |
Target: 5'- -gGCCGCGG-CGGuGCcaucgacgUGCUCGAUc -3' miRNA: 3'- ugCGGCGUCaGCC-CGuua-----ACGAGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home