miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27571 3' -56.6 NC_005882.1 + 30983 0.67 0.439863
Target:  5'- cACGCCGCAuGUUGuGcGCGAgucGgUCGACg -3'
miRNA:   3'- -UGCGGCGU-CAGC-C-CGUUaa-CgAGCUG- -5'
27571 3' -56.6 NC_005882.1 + 30641 0.67 0.460105
Target:  5'- gGCGCUGCGcuGaCGGGCAAcgUGaacgUCGACg -3'
miRNA:   3'- -UGCGGCGU--CaGCCCGUUa-ACg---AGCUG- -5'
27571 3' -56.6 NC_005882.1 + 27956 0.7 0.298232
Target:  5'- -aGCCGCGGcugcaacgcaUGGGCGAcaaGCUCGACg -3'
miRNA:   3'- ugCGGCGUCa---------GCCCGUUaa-CGAGCUG- -5'
27571 3' -56.6 NC_005882.1 + 27541 0.66 0.470409
Target:  5'- gGCGCCGCAaucggcaUCGGGC----GCUCGuCg -3'
miRNA:   3'- -UGCGGCGUc------AGCCCGuuaaCGAGCuG- -5'
27571 3' -56.6 NC_005882.1 + 27036 0.68 0.364316
Target:  5'- cGCGCUGCucccuuUCGGGCAGggcaUGCUgaUGACg -3'
miRNA:   3'- -UGCGGCGuc----AGCCCGUUa---ACGA--GCUG- -5'
27571 3' -56.6 NC_005882.1 + 26121 0.67 0.449921
Target:  5'- aACGCCGCGGUCauuuccGGCAGagcCUUGGCc -3'
miRNA:   3'- -UGCGGCGUCAGc-----CCGUUaacGAGCUG- -5'
27571 3' -56.6 NC_005882.1 + 25587 0.66 0.523566
Target:  5'- gGCGCCGCGcugCGuGaGCAAcgccagggGCUCGGCg -3'
miRNA:   3'- -UGCGGCGUca-GC-C-CGUUaa------CGAGCUG- -5'
27571 3' -56.6 NC_005882.1 + 24983 0.68 0.373257
Target:  5'- gACGCCGCGGagCGGGaaauCAAgcgGCgcgUCGACg -3'
miRNA:   3'- -UGCGGCGUCa-GCCC----GUUaa-CG---AGCUG- -5'
27571 3' -56.6 NC_005882.1 + 23455 0.67 0.460105
Target:  5'- -gGCCGCuGUC-GGCGAUga-UCGACg -3'
miRNA:   3'- ugCGGCGuCAGcCCGUUAacgAGCUG- -5'
27571 3' -56.6 NC_005882.1 + 22694 0.67 0.460105
Target:  5'- uGCGCCGCGucgacGUCGGacaGCGAcUGCacCGGCg -3'
miRNA:   3'- -UGCGGCGU-----CAGCC---CGUUaACGa-GCUG- -5'
27571 3' -56.6 NC_005882.1 + 22476 0.67 0.460105
Target:  5'- cACGCUGgGGcgcgCGGGC--UUGgUCGACg -3'
miRNA:   3'- -UGCGGCgUCa---GCCCGuuAACgAGCUG- -5'
27571 3' -56.6 NC_005882.1 + 22412 0.71 0.259801
Target:  5'- aGCGUCGCuGuguacucguggucuUCGGGCA---GCUCGACg -3'
miRNA:   3'- -UGCGGCGuC--------------AGCCCGUuaaCGAGCUG- -5'
27571 3' -56.6 NC_005882.1 + 22025 0.68 0.410479
Target:  5'- -gGCCGCGG-CGGuGCcaucgacgUGCUCGAUc -3'
miRNA:   3'- ugCGGCGUCaGCC-CGuua-----ACGAGCUG- -5'
27571 3' -56.6 NC_005882.1 + 21874 0.69 0.338394
Target:  5'- gACG-CGCAGcCGGGCGAcgaugGCaUCGACc -3'
miRNA:   3'- -UGCgGCGUCaGCCCGUUaa---CG-AGCUG- -5'
27571 3' -56.6 NC_005882.1 + 21465 0.66 0.512735
Target:  5'- uGCGCCGUAGUCGguGGUcGUgucGUUCGuCa -3'
miRNA:   3'- -UGCGGCGUCAGC--CCGuUAa--CGAGCuG- -5'
27571 3' -56.6 NC_005882.1 + 21212 0.67 0.449921
Target:  5'- gACGCCGagcaGGUUGaccGGCGcUUGCUCGcCg -3'
miRNA:   3'- -UGCGGCg---UCAGC---CCGUuAACGAGCuG- -5'
27571 3' -56.6 NC_005882.1 + 21087 0.68 0.364316
Target:  5'- gGCGUgugCGCAGcCGGcGCGAaggcGCUCGGCg -3'
miRNA:   3'- -UGCG---GCGUCaGCC-CGUUaa--CGAGCUG- -5'
27571 3' -56.6 NC_005882.1 + 15688 0.69 0.346884
Target:  5'- gACGCCGCcGUa--GCGGUUGCUCuGGCg -3'
miRNA:   3'- -UGCGGCGuCAgccCGUUAACGAG-CUG- -5'
27571 3' -56.6 NC_005882.1 + 15587 0.69 0.321872
Target:  5'- aACGCCGCcuucaCGGGCGGcaugUGCUCG-Cg -3'
miRNA:   3'- -UGCGGCGuca--GCCCGUUa---ACGAGCuG- -5'
27571 3' -56.6 NC_005882.1 + 14773 0.66 0.501999
Target:  5'- gGCGCUGCugauGUgGGGCGGUcagGUucacaucauuUCGACg -3'
miRNA:   3'- -UGCGGCGu---CAgCCCGUUAa--CG----------AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.