miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27571 5' -51.9 NC_005882.1 + 30621 0.66 0.818227
Target:  5'- uGGCCGGauCGGGCG--GCGAUgGCGc -3'
miRNA:   3'- gCCGGUUacGUCUGCuuUGCUAgCGC- -5'
27571 5' -51.9 NC_005882.1 + 18870 0.71 0.486156
Target:  5'- cCGGgCAGgcacGCAGAcCGAcaugAACGGUCGCGu -3'
miRNA:   3'- -GCCgGUUa---CGUCU-GCU----UUGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 4001 0.66 0.815304
Target:  5'- gGGCCAcgGCGGccaugauugcuuccGCGAuguGCG-UCGCc -3'
miRNA:   3'- gCCGGUuaCGUC--------------UGCUu--UGCuAGCGc -5'
27571 5' -51.9 NC_005882.1 + 32092 0.66 0.776734
Target:  5'- aCGGCC---GCAGAagccuacCGAAcCGAUCGUGc -3'
miRNA:   3'- -GCCGGuuaCGUCU-------GCUUuGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 28038 0.67 0.756517
Target:  5'- -aGCCGA-GCuGGCGAAGCuGcgCGCGg -3'
miRNA:   3'- gcCGGUUaCGuCUGCUUUG-CuaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 7682 0.67 0.756517
Target:  5'- gGGUUugAAUGCuGuCGAGGCGcUCGCGg -3'
miRNA:   3'- gCCGG--UUACGuCuGCUUUGCuAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 18624 0.67 0.745669
Target:  5'- -cGCUAAccUGUcGACGAGcCGAUCGCGc -3'
miRNA:   3'- gcCGGUU--ACGuCUGCUUuGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 4722 0.71 0.496935
Target:  5'- gGGCCGGUaaGCucGGCGA--CGAUCGCGu -3'
miRNA:   3'- gCCGGUUA--CGu-CUGCUuuGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 12654 0.7 0.552285
Target:  5'- -cGCCAAUacGCAGACG--GCGcgCGCGa -3'
miRNA:   3'- gcCGGUUA--CGUCUGCuuUGCuaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 29768 0.7 0.582956
Target:  5'- gGGCCGGcuccaaggcaacgcUGCAGACGAAggcACG--CGCGg -3'
miRNA:   3'- gCCGGUU--------------ACGUCUGCUU---UGCuaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 23453 0.7 0.586387
Target:  5'- gCGGCCGcUGUcGGCGAugaucGACGAUcCGCa -3'
miRNA:   3'- -GCCGGUuACGuCUGCU-----UUGCUA-GCGc -5'
27571 5' -51.9 NC_005882.1 + 12526 0.69 0.608196
Target:  5'- gCGGCCAGUGUgucgcGGCGGcggccggcgcugcGGCGAUCgGCGc -3'
miRNA:   3'- -GCCGGUUACGu----CUGCU-------------UUGCUAG-CGC- -5'
27571 5' -51.9 NC_005882.1 + 16725 0.69 0.620865
Target:  5'- aGGCCGGgcuugaGguGACG-GACGAcauUCGCGa -3'
miRNA:   3'- gCCGGUUa-----CguCUGCuUUGCU---AGCGC- -5'
27571 5' -51.9 NC_005882.1 + 14093 0.69 0.643922
Target:  5'- -cGCCGAUcCAGGCGAA-CGuAUCGCGc -3'
miRNA:   3'- gcCGGUUAcGUCUGCUUuGC-UAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 33993 0.68 0.701145
Target:  5'- uGGCCGGUGaguuguuuagcCAGuACGGAACGAcugcCGCGc -3'
miRNA:   3'- gCCGGUUAC-----------GUC-UGCUUUGCUa---GCGC- -5'
27571 5' -51.9 NC_005882.1 + 10957 0.68 0.701145
Target:  5'- uGGCacuuuCGGUGcCGGACGAAGCGuGUUGCu -3'
miRNA:   3'- gCCG-----GUUAC-GUCUGCUUUGC-UAGCGc -5'
27571 5' -51.9 NC_005882.1 + 28585 0.68 0.712419
Target:  5'- uCGGCgCAAggcgGCuuGGCGAacgcGACGAUCGgGa -3'
miRNA:   3'- -GCCG-GUUa---CGu-CUGCU----UUGCUAGCgC- -5'
27571 5' -51.9 NC_005882.1 + 20444 0.67 0.734694
Target:  5'- gCGGCCg--GCAG-CGAucCGGUCgGCGu -3'
miRNA:   3'- -GCCGGuuaCGUCuGCUuuGCUAG-CGC- -5'
27571 5' -51.9 NC_005882.1 + 12157 0.67 0.734694
Target:  5'- cCGGCCGA-GCuGGGCGAGGCGca-GCc -3'
miRNA:   3'- -GCCGGUUaCG-UCUGCUUUGCuagCGc -5'
27571 5' -51.9 NC_005882.1 + 15437 0.67 0.745669
Target:  5'- aCGGCCAAUaccucGCAGaagucGCGAugcagcgcuacGGCGcAUCGCGc -3'
miRNA:   3'- -GCCGGUUA-----CGUC-----UGCU-----------UUGC-UAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.