miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27571 5' -51.9 NC_005882.1 + 15437 0.67 0.745669
Target:  5'- aCGGCCAAUaccucGCAGaagucGCGAugcagcgcuacGGCGcAUCGCGc -3'
miRNA:   3'- -GCCGGUUA-----CGUC-----UGCU-----------UUGC-UAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 15701 0.7 0.574965
Target:  5'- uGGCCGGUcgcGCGGACGuc-CGGgaugCGCGg -3'
miRNA:   3'- gCCGGUUA---CGUCUGCuuuGCUa---GCGC- -5'
27571 5' -51.9 NC_005882.1 + 16281 0.69 0.609347
Target:  5'- uCGGCCGGcuUGCcGACGAcguCGAUCgGCa -3'
miRNA:   3'- -GCCGGUU--ACGuCUGCUuu-GCUAG-CGc -5'
27571 5' -51.9 NC_005882.1 + 16725 0.69 0.620865
Target:  5'- aGGCCGGgcuugaGguGACG-GACGAcauUCGCGa -3'
miRNA:   3'- gCCGGUUa-----CguCUGCuUUGCU---AGCGC- -5'
27571 5' -51.9 NC_005882.1 + 18008 0.68 0.689797
Target:  5'- gGGUCGacgGUGCGGaACGucGCGAccUCGCGc -3'
miRNA:   3'- gCCGGU---UACGUC-UGCuuUGCU--AGCGC- -5'
27571 5' -51.9 NC_005882.1 + 18403 0.66 0.818227
Target:  5'- cCGGCCu-UGCGacGCGAcGCGGcCGCGg -3'
miRNA:   3'- -GCCGGuuACGUc-UGCUuUGCUaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 18624 0.67 0.745669
Target:  5'- -cGCUAAccUGUcGACGAGcCGAUCGCGc -3'
miRNA:   3'- gcCGGUU--ACGuCUGCUUuGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 18870 0.71 0.486156
Target:  5'- cCGGgCAGgcacGCAGAcCGAcaugAACGGUCGCGu -3'
miRNA:   3'- -GCCgGUUa---CGUCU-GCU----UUGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 20038 0.66 0.818227
Target:  5'- --uCCGGUGCuGACGAAucucGCGAUCGg- -3'
miRNA:   3'- gccGGUUACGuCUGCUU----UGCUAGCgc -5'
27571 5' -51.9 NC_005882.1 + 20127 0.68 0.689797
Target:  5'- uGGCCGAUGaauucGGCGuucguguAAcCGAUCGCGa -3'
miRNA:   3'- gCCGGUUACgu---CUGCu------UU-GCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 20444 0.67 0.734694
Target:  5'- gCGGCCg--GCAG-CGAucCGGUCgGCGu -3'
miRNA:   3'- -GCCGGuuaCGUCuGCUuuGCUAG-CGC- -5'
27571 5' -51.9 NC_005882.1 + 21091 0.66 0.798386
Target:  5'- aGGCCGGcgGCAG-CGGuAACGGaCGUGg -3'
miRNA:   3'- gCCGGUUa-CGUCuGCU-UUGCUaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 22066 0.73 0.414136
Target:  5'- gCGGCCGuugaGCuGGCGcagcACGAUCGCGa -3'
miRNA:   3'- -GCCGGUua--CGuCUGCuu--UGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 23167 0.74 0.357899
Target:  5'- uGGCCGuc-CAGcuCGggGCGAUCGCGu -3'
miRNA:   3'- gCCGGUuacGUCu-GCuuUGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 23453 0.7 0.586387
Target:  5'- gCGGCCGcUGUcGGCGAugaucGACGAUcCGCa -3'
miRNA:   3'- -GCCGGUuACGuCUGCU-----UUGCUA-GCGc -5'
27571 5' -51.9 NC_005882.1 + 26286 0.75 0.315283
Target:  5'- cCGGCCuucuUGUAGGCGucGAUGGUCGCc -3'
miRNA:   3'- -GCCGGuu--ACGUCUGCu-UUGCUAGCGc -5'
27571 5' -51.9 NC_005882.1 + 26770 0.67 0.734694
Target:  5'- uCGGCCGGgauggGCGGccGCGAAcugcGCGGUgCGCu -3'
miRNA:   3'- -GCCGGUUa----CGUC--UGCUU----UGCUA-GCGc -5'
27571 5' -51.9 NC_005882.1 + 27307 0.68 0.700013
Target:  5'- uCGGCgucCAGUagcgGUAGAUGAGguacgcgccgaccGCGAUCGCGg -3'
miRNA:   3'- -GCCG---GUUA----CGUCUGCUU-------------UGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 27656 0.67 0.742389
Target:  5'- gCGGCCGcggccugcgucgccAUGCcGGCGGccGCGcgCGCGg -3'
miRNA:   3'- -GCCGGU--------------UACGuCUGCUu-UGCuaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 28038 0.67 0.756517
Target:  5'- -aGCCGA-GCuGGCGAAGCuGcgCGCGg -3'
miRNA:   3'- gcCGGUUaCGuCUGCUUUG-CuaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.