miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27571 5' -51.9 NC_005882.1 + 2427 0.73 0.40439
Target:  5'- -cGCCAGcucGCGaACGAGGCGAUCGCGc -3'
miRNA:   3'- gcCGGUUa--CGUcUGCUUUGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 2608 0.71 0.518804
Target:  5'- gCGGCagagGCAGACGAGAaagacgauucCGAUgGCGa -3'
miRNA:   3'- -GCCGguuaCGUCUGCUUU----------GCUAgCGC- -5'
27571 5' -51.9 NC_005882.1 + 4001 0.66 0.815304
Target:  5'- gGGCCAcgGCGGccaugauugcuuccGCGAuguGCG-UCGCc -3'
miRNA:   3'- gCCGGUuaCGUC--------------UGCUu--UGCuAGCGc -5'
27571 5' -51.9 NC_005882.1 + 4206 0.66 0.777783
Target:  5'- gGGCgGcgGCaAGACGAcGCuGAUgCGCGa -3'
miRNA:   3'- gCCGgUuaCG-UCUGCUuUG-CUA-GCGC- -5'
27571 5' -51.9 NC_005882.1 + 4657 0.68 0.654287
Target:  5'- aGGCCGAacuUGCGGAacaccUGAAucugucgcaggcgGCGGUCGCu -3'
miRNA:   3'- gCCGGUU---ACGUCU-----GCUU-------------UGCUAGCGc -5'
27571 5' -51.9 NC_005882.1 + 4722 0.71 0.496935
Target:  5'- gGGCCGGUaaGCucGGCGA--CGAUCGCGu -3'
miRNA:   3'- gCCGGUUA--CGu-CUGCUuuGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 6442 0.68 0.678388
Target:  5'- cCGGCCAcgGCAaaaaagguGCGAucuACGA-CGCGg -3'
miRNA:   3'- -GCCGGUuaCGUc-------UGCUu--UGCUaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 6606 0.75 0.323491
Target:  5'- aGGCCGcUGCGGACGgAGACGAcguccCGCa -3'
miRNA:   3'- gCCGGUuACGUCUGC-UUUGCUa----GCGc -5'
27571 5' -51.9 NC_005882.1 + 7682 0.67 0.756517
Target:  5'- gGGUUugAAUGCuGuCGAGGCGcUCGCGg -3'
miRNA:   3'- gCCGG--UUACGuCuGCUUUGCuAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 8118 1.1 0.001261
Target:  5'- uCGGCCAAUGCAGACGAAACGAUCGCGa -3'
miRNA:   3'- -GCCGGUUACGUCUGCUUUGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 8762 0.68 0.689797
Target:  5'- uGGUgcaGAUGCuuGACGAAGCGAggucUCGCc -3'
miRNA:   3'- gCCGg--UUACGu-CUGCUUUGCU----AGCGc -5'
27571 5' -51.9 NC_005882.1 + 10104 0.71 0.496935
Target:  5'- gCGGCgCuugGUGCGGugGAcuUGAUCGCu -3'
miRNA:   3'- -GCCG-Gu--UACGUCugCUuuGCUAGCGc -5'
27571 5' -51.9 NC_005882.1 + 10957 0.68 0.701145
Target:  5'- uGGCacuuuCGGUGcCGGACGAAGCGuGUUGCu -3'
miRNA:   3'- gCCG-----GUUAC-GUCUGCUUUGC-UAGCGc -5'
27571 5' -51.9 NC_005882.1 + 11067 0.68 0.701145
Target:  5'- aCGaGCaAAUGCGGGCGAuGgGAUaCGCGg -3'
miRNA:   3'- -GC-CGgUUACGUCUGCUuUgCUA-GCGC- -5'
27571 5' -51.9 NC_005882.1 + 12157 0.67 0.734694
Target:  5'- cCGGCCGA-GCuGGGCGAGGCGca-GCc -3'
miRNA:   3'- -GCCGGUUaCG-UCUGCUUUGCuagCGc -5'
27571 5' -51.9 NC_005882.1 + 12250 0.73 0.376039
Target:  5'- gCGGCCGGUGCAuGCGA-GCGcAUgGCGa -3'
miRNA:   3'- -GCCGGUUACGUcUGCUuUGC-UAgCGC- -5'
27571 5' -51.9 NC_005882.1 + 12526 0.69 0.608196
Target:  5'- gCGGCCAGUGUgucgcGGCGGcggccggcgcugcGGCGAUCgGCGc -3'
miRNA:   3'- -GCCGGUUACGu----CUGCU-------------UUGCUAG-CGC- -5'
27571 5' -51.9 NC_005882.1 + 12654 0.7 0.552285
Target:  5'- -cGCCAAUacGCAGACG--GCGcgCGCGa -3'
miRNA:   3'- gcCGGUUA--CGUCUGCuuUGCuaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 14093 0.69 0.643922
Target:  5'- -cGCCGAUcCAGGCGAA-CGuAUCGCGc -3'
miRNA:   3'- gcCGGUUAcGUCUGCUUuGC-UAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 14290 0.7 0.585243
Target:  5'- aGGCCGcUGCucuuGACGAccuugucGACGGcCGCGg -3'
miRNA:   3'- gCCGGUuACGu---CUGCU-------UUGCUaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.