miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27571 5' -51.9 NC_005882.1 + 8118 1.1 0.001261
Target:  5'- uCGGCCAAUGCAGACGAAACGAUCGCGa -3'
miRNA:   3'- -GCCGGUUACGUCUGCUUUGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 29303 0.76 0.258049
Target:  5'- aGGCCAAaGCGuACGAgcacaccacgcuggcGACGAUCGCGg -3'
miRNA:   3'- gCCGGUUaCGUcUGCU---------------UUGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 26286 0.75 0.315283
Target:  5'- cCGGCCuucuUGUAGGCGucGAUGGUCGCc -3'
miRNA:   3'- -GCCGGuu--ACGUCUGCu-UUGCUAGCGc -5'
27571 5' -51.9 NC_005882.1 + 6606 0.75 0.323491
Target:  5'- aGGCCGcUGCGGACGgAGACGAcguccCGCa -3'
miRNA:   3'- gCCGGUuACGUCUGC-UUUGCUa----GCGc -5'
27571 5' -51.9 NC_005882.1 + 23167 0.74 0.357899
Target:  5'- uGGCCGuc-CAGcuCGggGCGAUCGCGu -3'
miRNA:   3'- gCCGGUuacGUCu-GCuuUGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 12250 0.73 0.376039
Target:  5'- gCGGCCGGUGCAuGCGA-GCGcAUgGCGa -3'
miRNA:   3'- -GCCGGUUACGUcUGCUuUGC-UAgCGC- -5'
27571 5' -51.9 NC_005882.1 + 2427 0.73 0.40439
Target:  5'- -cGCCAGcucGCGaACGAGGCGAUCGCGc -3'
miRNA:   3'- gcCGGUUa--CGUcUGCUUUGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 22066 0.73 0.414136
Target:  5'- gCGGCCGuugaGCuGGCGcagcACGAUCGCGa -3'
miRNA:   3'- -GCCGGUua--CGuCUGCuu--UGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 30436 0.72 0.434054
Target:  5'- uGGCgCGGUGCu--CGAGuACGAUCGCGc -3'
miRNA:   3'- gCCG-GUUACGucuGCUU-UGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 18870 0.71 0.486156
Target:  5'- cCGGgCAGgcacGCAGAcCGAcaugAACGGUCGCGu -3'
miRNA:   3'- -GCCgGUUa---CGUCU-GCU----UUGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 4722 0.71 0.496935
Target:  5'- gGGCCGGUaaGCucGGCGA--CGAUCGCGu -3'
miRNA:   3'- gCCGGUUA--CGu-CUGCUuuGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 10104 0.71 0.496935
Target:  5'- gCGGCgCuugGUGCGGugGAcuUGAUCGCu -3'
miRNA:   3'- -GCCG-Gu--UACGUCugCUuuGCUAGCGc -5'
27571 5' -51.9 NC_005882.1 + 2608 0.71 0.518804
Target:  5'- gCGGCagagGCAGACGAGAaagacgauucCGAUgGCGa -3'
miRNA:   3'- -GCCGguuaCGUCUGCUUU----------GCUAgCGC- -5'
27571 5' -51.9 NC_005882.1 + 35952 0.71 0.529881
Target:  5'- cCGGUgAGUGU--GCG-AGCGAUCGCGa -3'
miRNA:   3'- -GCCGgUUACGucUGCuUUGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 12654 0.7 0.552285
Target:  5'- -cGCCAAUacGCAGACG--GCGcgCGCGa -3'
miRNA:   3'- gcCGGUUA--CGUCUGCuuUGCuaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 15701 0.7 0.574965
Target:  5'- uGGCCGGUcgcGCGGACGuc-CGGgaugCGCGg -3'
miRNA:   3'- gCCGGUUA---CGUCUGCuuuGCUa---GCGC- -5'
27571 5' -51.9 NC_005882.1 + 29768 0.7 0.582956
Target:  5'- gGGCCGGcuccaaggcaacgcUGCAGACGAAggcACG--CGCGg -3'
miRNA:   3'- gCCGGUU--------------ACGUCUGCUU---UGCuaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 14290 0.7 0.585243
Target:  5'- aGGCCGcUGCucuuGACGAccuugucGACGGcCGCGg -3'
miRNA:   3'- gCCGGUuACGu---CUGCU-------UUGCUaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 23453 0.7 0.586387
Target:  5'- gCGGCCGcUGUcGGCGAugaucGACGAUcCGCa -3'
miRNA:   3'- -GCCGGUuACGuCUGCU-----UUGCUA-GCGc -5'
27571 5' -51.9 NC_005882.1 + 12526 0.69 0.608196
Target:  5'- gCGGCCAGUGUgucgcGGCGGcggccggcgcugcGGCGAUCgGCGc -3'
miRNA:   3'- -GCCGGUUACGu----CUGCU-------------UUGCUAG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.