Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 10957 | 0.68 | 0.701145 |
Target: 5'- uGGCacuuuCGGUGcCGGACGAAGCGuGUUGCu -3' miRNA: 3'- gCCG-----GUUAC-GUCUGCUUUGC-UAGCGc -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 12526 | 0.69 | 0.608196 |
Target: 5'- gCGGCCAGUGUgucgcGGCGGcggccggcgcugcGGCGAUCgGCGc -3' miRNA: 3'- -GCCGGUUACGu----CUGCU-------------UUGCUAG-CGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 16725 | 0.69 | 0.620865 |
Target: 5'- aGGCCGGgcuugaGguGACG-GACGAcauUCGCGa -3' miRNA: 3'- gCCGGUUa-----CguCUGCuUUGCU---AGCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 14093 | 0.69 | 0.643922 |
Target: 5'- -cGCCGAUcCAGGCGAA-CGuAUCGCGc -3' miRNA: 3'- gcCGGUUAcGUCUGCUUuGC-UAGCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 29073 | 0.68 | 0.678388 |
Target: 5'- aGGCCAGU-CcGACGAGAUcgaGGUCGUGc -3' miRNA: 3'- gCCGGUUAcGuCUGCUUUG---CUAGCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 8762 | 0.68 | 0.689797 |
Target: 5'- uGGUgcaGAUGCuuGACGAAGCGAggucUCGCc -3' miRNA: 3'- gCCGg--UUACGu-CUGCUUUGCU----AGCGc -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 11067 | 0.68 | 0.701145 |
Target: 5'- aCGaGCaAAUGCGGGCGAuGgGAUaCGCGg -3' miRNA: 3'- -GC-CGgUUACGUCUGCUuUgCUA-GCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 30182 | 0.68 | 0.701145 |
Target: 5'- aCGGUCAGUGCGu-CGAAGCccggcuUCGCGc -3' miRNA: 3'- -GCCGGUUACGUcuGCUUUGcu----AGCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 33993 | 0.68 | 0.701145 |
Target: 5'- uGGCCGGUGaguuguuuagcCAGuACGGAACGAcugcCGCGc -3' miRNA: 3'- gCCGGUUAC-----------GUC-UGCUUUGCUa---GCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 23453 | 0.7 | 0.586387 |
Target: 5'- gCGGCCGcUGUcGGCGAugaucGACGAUcCGCa -3' miRNA: 3'- -GCCGGUuACGuCUGCU-----UUGCUA-GCGc -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 29768 | 0.7 | 0.582956 |
Target: 5'- gGGCCGGcuccaaggcaacgcUGCAGACGAAggcACG--CGCGg -3' miRNA: 3'- gCCGGUU--------------ACGUCUGCUU---UGCuaGCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 12654 | 0.7 | 0.552285 |
Target: 5'- -cGCCAAUacGCAGACG--GCGcgCGCGa -3' miRNA: 3'- gcCGGUUA--CGUCUGCuuUGCuaGCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 23167 | 0.74 | 0.357899 |
Target: 5'- uGGCCGuc-CAGcuCGggGCGAUCGCGu -3' miRNA: 3'- gCCGGUuacGUCu-GCuuUGCUAGCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 12250 | 0.73 | 0.376039 |
Target: 5'- gCGGCCGGUGCAuGCGA-GCGcAUgGCGa -3' miRNA: 3'- -GCCGGUUACGUcUGCUuUGC-UAgCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 2427 | 0.73 | 0.40439 |
Target: 5'- -cGCCAGcucGCGaACGAGGCGAUCGCGc -3' miRNA: 3'- gcCGGUUa--CGUcUGCUUUGCUAGCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 30436 | 0.72 | 0.434054 |
Target: 5'- uGGCgCGGUGCu--CGAGuACGAUCGCGc -3' miRNA: 3'- gCCG-GUUACGucuGCUU-UGCUAGCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 18870 | 0.71 | 0.486156 |
Target: 5'- cCGGgCAGgcacGCAGAcCGAcaugAACGGUCGCGu -3' miRNA: 3'- -GCCgGUUa---CGUCU-GCU----UUGCUAGCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 4722 | 0.71 | 0.496935 |
Target: 5'- gGGCCGGUaaGCucGGCGA--CGAUCGCGu -3' miRNA: 3'- gCCGGUUA--CGu-CUGCUuuGCUAGCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 2608 | 0.71 | 0.518804 |
Target: 5'- gCGGCagagGCAGACGAGAaagacgauucCGAUgGCGa -3' miRNA: 3'- -GCCGguuaCGUCUGCUUU----------GCUAgCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 35952 | 0.71 | 0.529881 |
Target: 5'- cCGGUgAGUGU--GCG-AGCGAUCGCGa -3' miRNA: 3'- -GCCGgUUACGucUGCuUUGCUAGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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