miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27571 5' -51.9 NC_005882.1 + 35952 0.71 0.529881
Target:  5'- cCGGUgAGUGU--GCG-AGCGAUCGCGa -3'
miRNA:   3'- -GCCGgUUACGucUGCuUUGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 35910 0.66 0.818227
Target:  5'- uCGGCguGacuuuccgGCAGAaGGcAGCGAUCGCGa -3'
miRNA:   3'- -GCCGguUa-------CGUCUgCU-UUGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 33993 0.68 0.701145
Target:  5'- uGGCCGGUGaguuguuuagcCAGuACGGAACGAcugcCGCGc -3'
miRNA:   3'- gCCGGUUAC-----------GUC-UGCUUUGCUa---GCGC- -5'
27571 5' -51.9 NC_005882.1 + 32092 0.66 0.776734
Target:  5'- aCGGCC---GCAGAagccuacCGAAcCGAUCGUGc -3'
miRNA:   3'- -GCCGGuuaCGUCU-------GCUUuGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 30621 0.66 0.818227
Target:  5'- uGGCCGGauCGGGCG--GCGAUgGCGc -3'
miRNA:   3'- gCCGGUUacGUCUGCuuUGCUAgCGC- -5'
27571 5' -51.9 NC_005882.1 + 30436 0.72 0.434054
Target:  5'- uGGCgCGGUGCu--CGAGuACGAUCGCGc -3'
miRNA:   3'- gCCG-GUUACGucuGCUU-UGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 30182 0.68 0.701145
Target:  5'- aCGGUCAGUGCGu-CGAAGCccggcuUCGCGc -3'
miRNA:   3'- -GCCGGUUACGUcuGCUUUGcu----AGCGC- -5'
27571 5' -51.9 NC_005882.1 + 29809 0.69 0.632393
Target:  5'- cCGGCCcGUGCGGAaagcCGcAGCGuGUCGCc -3'
miRNA:   3'- -GCCGGuUACGUCU----GCuUUGC-UAGCGc -5'
27571 5' -51.9 NC_005882.1 + 29768 0.7 0.582956
Target:  5'- gGGCCGGcuccaaggcaacgcUGCAGACGAAggcACG--CGCGg -3'
miRNA:   3'- gCCGGUU--------------ACGUCUGCUU---UGCuaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 29303 0.76 0.258049
Target:  5'- aGGCCAAaGCGuACGAgcacaccacgcuggcGACGAUCGCGg -3'
miRNA:   3'- gCCGGUUaCGUcUGCU---------------UUGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 29073 0.68 0.678388
Target:  5'- aGGCCAGU-CcGACGAGAUcgaGGUCGUGc -3'
miRNA:   3'- gCCGGUUAcGuCUGCUUUG---CUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 28585 0.68 0.712419
Target:  5'- uCGGCgCAAggcgGCuuGGCGAacgcGACGAUCGgGa -3'
miRNA:   3'- -GCCG-GUUa---CGu-CUGCU----UUGCUAGCgC- -5'
27571 5' -51.9 NC_005882.1 + 28038 0.67 0.756517
Target:  5'- -aGCCGA-GCuGGCGAAGCuGcgCGCGg -3'
miRNA:   3'- gcCGGUUaCGuCUGCUUUG-CuaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 27656 0.67 0.742389
Target:  5'- gCGGCCGcggccugcgucgccAUGCcGGCGGccGCGcgCGCGg -3'
miRNA:   3'- -GCCGGU--------------UACGuCUGCUu-UGCuaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 27307 0.68 0.700013
Target:  5'- uCGGCgucCAGUagcgGUAGAUGAGguacgcgccgaccGCGAUCGCGg -3'
miRNA:   3'- -GCCG---GUUA----CGUCUGCUU-------------UGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 26770 0.67 0.734694
Target:  5'- uCGGCCGGgauggGCGGccGCGAAcugcGCGGUgCGCu -3'
miRNA:   3'- -GCCGGUUa----CGUC--UGCUU----UGCUA-GCGc -5'
27571 5' -51.9 NC_005882.1 + 26286 0.75 0.315283
Target:  5'- cCGGCCuucuUGUAGGCGucGAUGGUCGCc -3'
miRNA:   3'- -GCCGGuu--ACGUCUGCu-UUGCUAGCGc -5'
27571 5' -51.9 NC_005882.1 + 23453 0.7 0.586387
Target:  5'- gCGGCCGcUGUcGGCGAugaucGACGAUcCGCa -3'
miRNA:   3'- -GCCGGUuACGuCUGCU-----UUGCUA-GCGc -5'
27571 5' -51.9 NC_005882.1 + 23167 0.74 0.357899
Target:  5'- uGGCCGuc-CAGcuCGggGCGAUCGCGu -3'
miRNA:   3'- gCCGGUuacGUCu-GCuuUGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 22066 0.73 0.414136
Target:  5'- gCGGCCGuugaGCuGGCGcagcACGAUCGCGa -3'
miRNA:   3'- -GCCGGUua--CGuCUGCuu--UGCUAGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.