Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27571 | 5' | -51.9 | NC_005882.1 | + | 10104 | 0.71 | 0.496935 |
Target: 5'- gCGGCgCuugGUGCGGugGAcuUGAUCGCu -3' miRNA: 3'- -GCCG-Gu--UACGUCugCUuuGCUAGCGc -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 4722 | 0.71 | 0.496935 |
Target: 5'- gGGCCGGUaaGCucGGCGA--CGAUCGCGu -3' miRNA: 3'- gCCGGUUA--CGu-CUGCUuuGCUAGCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 18870 | 0.71 | 0.486156 |
Target: 5'- cCGGgCAGgcacGCAGAcCGAcaugAACGGUCGCGu -3' miRNA: 3'- -GCCgGUUa---CGUCU-GCU----UUGCUAGCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 30436 | 0.72 | 0.434054 |
Target: 5'- uGGCgCGGUGCu--CGAGuACGAUCGCGc -3' miRNA: 3'- gCCG-GUUACGucuGCUU-UGCUAGCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 22066 | 0.73 | 0.414136 |
Target: 5'- gCGGCCGuugaGCuGGCGcagcACGAUCGCGa -3' miRNA: 3'- -GCCGGUua--CGuCUGCuu--UGCUAGCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 2427 | 0.73 | 0.40439 |
Target: 5'- -cGCCAGcucGCGaACGAGGCGAUCGCGc -3' miRNA: 3'- gcCGGUUa--CGUcUGCUUUGCUAGCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 12250 | 0.73 | 0.376039 |
Target: 5'- gCGGCCGGUGCAuGCGA-GCGcAUgGCGa -3' miRNA: 3'- -GCCGGUUACGUcUGCUuUGC-UAgCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 23167 | 0.74 | 0.357899 |
Target: 5'- uGGCCGuc-CAGcuCGggGCGAUCGCGu -3' miRNA: 3'- gCCGGUuacGUCu-GCuuUGCUAGCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 6606 | 0.75 | 0.323491 |
Target: 5'- aGGCCGcUGCGGACGgAGACGAcguccCGCa -3' miRNA: 3'- gCCGGUuACGUCUGC-UUUGCUa----GCGc -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 26286 | 0.75 | 0.315283 |
Target: 5'- cCGGCCuucuUGUAGGCGucGAUGGUCGCc -3' miRNA: 3'- -GCCGGuu--ACGUCUGCu-UUGCUAGCGc -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 29303 | 0.76 | 0.258049 |
Target: 5'- aGGCCAAaGCGuACGAgcacaccacgcuggcGACGAUCGCGg -3' miRNA: 3'- gCCGGUUaCGUcUGCU---------------UUGCUAGCGC- -5' |
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27571 | 5' | -51.9 | NC_005882.1 | + | 8118 | 1.1 | 0.001261 |
Target: 5'- uCGGCCAAUGCAGACGAAACGAUCGCGa -3' miRNA: 3'- -GCCGGUUACGUCUGCUUUGCUAGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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