miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27571 5' -51.9 NC_005882.1 + 11067 0.68 0.701145
Target:  5'- aCGaGCaAAUGCGGGCGAuGgGAUaCGCGg -3'
miRNA:   3'- -GC-CGgUUACGUCUGCUuUgCUA-GCGC- -5'
27571 5' -51.9 NC_005882.1 + 27307 0.68 0.700013
Target:  5'- uCGGCgucCAGUagcgGUAGAUGAGguacgcgccgaccGCGAUCGCGg -3'
miRNA:   3'- -GCCG---GUUA----CGUCUGCUU-------------UGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 8762 0.68 0.689797
Target:  5'- uGGUgcaGAUGCuuGACGAAGCGAggucUCGCc -3'
miRNA:   3'- gCCGg--UUACGu-CUGCUUUGCU----AGCGc -5'
27571 5' -51.9 NC_005882.1 + 20127 0.68 0.689797
Target:  5'- uGGCCGAUGaauucGGCGuucguguAAcCGAUCGCGa -3'
miRNA:   3'- gCCGGUUACgu---CUGCu------UU-GCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 18008 0.68 0.689797
Target:  5'- gGGUCGacgGUGCGGaACGucGCGAccUCGCGc -3'
miRNA:   3'- gCCGGU---UACGUC-UGCuuUGCU--AGCGC- -5'
27571 5' -51.9 NC_005882.1 + 29073 0.68 0.678388
Target:  5'- aGGCCAGU-CcGACGAGAUcgaGGUCGUGc -3'
miRNA:   3'- gCCGGUUAcGuCUGCUUUG---CUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 6442 0.68 0.678388
Target:  5'- cCGGCCAcgGCAaaaaagguGCGAucuACGA-CGCGg -3'
miRNA:   3'- -GCCGGUuaCGUc-------UGCUu--UGCUaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 4657 0.68 0.654287
Target:  5'- aGGCCGAacuUGCGGAacaccUGAAucugucgcaggcgGCGGUCGCu -3'
miRNA:   3'- gCCGGUU---ACGUCU-----GCUU-------------UGCUAGCGc -5'
27571 5' -51.9 NC_005882.1 + 14093 0.69 0.643922
Target:  5'- -cGCCGAUcCAGGCGAA-CGuAUCGCGc -3'
miRNA:   3'- gcCGGUUAcGUCUGCUUuGC-UAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 29809 0.69 0.632393
Target:  5'- cCGGCCcGUGCGGAaagcCGcAGCGuGUCGCc -3'
miRNA:   3'- -GCCGGuUACGUCU----GCuUUGC-UAGCGc -5'
27571 5' -51.9 NC_005882.1 + 16725 0.69 0.620865
Target:  5'- aGGCCGGgcuugaGguGACG-GACGAcauUCGCGa -3'
miRNA:   3'- gCCGGUUa-----CguCUGCuUUGCU---AGCGC- -5'
27571 5' -51.9 NC_005882.1 + 16281 0.69 0.609347
Target:  5'- uCGGCCGGcuUGCcGACGAcguCGAUCgGCa -3'
miRNA:   3'- -GCCGGUU--ACGuCUGCUuu-GCUAG-CGc -5'
27571 5' -51.9 NC_005882.1 + 12526 0.69 0.608196
Target:  5'- gCGGCCAGUGUgucgcGGCGGcggccggcgcugcGGCGAUCgGCGc -3'
miRNA:   3'- -GCCGGUUACGu----CUGCU-------------UUGCUAG-CGC- -5'
27571 5' -51.9 NC_005882.1 + 23453 0.7 0.586387
Target:  5'- gCGGCCGcUGUcGGCGAugaucGACGAUcCGCa -3'
miRNA:   3'- -GCCGGUuACGuCUGCU-----UUGCUA-GCGc -5'
27571 5' -51.9 NC_005882.1 + 14290 0.7 0.585243
Target:  5'- aGGCCGcUGCucuuGACGAccuugucGACGGcCGCGg -3'
miRNA:   3'- gCCGGUuACGu---CUGCU-------UUGCUaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 29768 0.7 0.582956
Target:  5'- gGGCCGGcuccaaggcaacgcUGCAGACGAAggcACG--CGCGg -3'
miRNA:   3'- gCCGGUU--------------ACGUCUGCUU---UGCuaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 15701 0.7 0.574965
Target:  5'- uGGCCGGUcgcGCGGACGuc-CGGgaugCGCGg -3'
miRNA:   3'- gCCGGUUA---CGUCUGCuuuGCUa---GCGC- -5'
27571 5' -51.9 NC_005882.1 + 12654 0.7 0.552285
Target:  5'- -cGCCAAUacGCAGACG--GCGcgCGCGa -3'
miRNA:   3'- gcCGGUUA--CGUCUGCuuUGCuaGCGC- -5'
27571 5' -51.9 NC_005882.1 + 35952 0.71 0.529881
Target:  5'- cCGGUgAGUGU--GCG-AGCGAUCGCGa -3'
miRNA:   3'- -GCCGgUUACGucUGCuUUGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 2608 0.71 0.518804
Target:  5'- gCGGCagagGCAGACGAGAaagacgauucCGAUgGCGa -3'
miRNA:   3'- -GCCGguuaCGUCUGCUUU----------GCUAgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.