Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27573 | 5' | -52.3 | NC_005882.1 | + | 1512 | 0.68 | 0.663486 |
Target: 5'- uGCGAUUGcUUUCGuguccuggucgaucGCCGCaCGgGUCGACg -3' miRNA: 3'- -CGUUGAC-AAAGC--------------CGGUG-GUgCAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 3554 | 0.71 | 0.486156 |
Target: 5'- aGCAGCgacaccGUUUCGGCacgAUCGCGUCG-Cg -3' miRNA: 3'- -CGUUGa-----CAAAGCCGg--UGGUGCAGCuG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 5040 | 0.67 | 0.723606 |
Target: 5'- gGCAaggcACUGccgUUCGGCgGCCGucUCGACc -3' miRNA: 3'- -CGU----UGACa--AAGCCGgUGGUgcAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 5122 | 0.68 | 0.632393 |
Target: 5'- uGCGGCaGUcUCGGCauagccgaaauCGCCACGUaCGAUg -3' miRNA: 3'- -CGUUGaCAaAGCCG-----------GUGGUGCA-GCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 8141 | 0.69 | 0.609347 |
Target: 5'- uGCAugUc-UUCGGCCGUCGCGUCG-Cg -3' miRNA: 3'- -CGUugAcaAAGCCGGUGGUGCAGCuG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 8625 | 0.75 | 0.30248 |
Target: 5'- uCGACUua-UCGGCCACCuggaggaacagggcuGCGUCGACg -3' miRNA: 3'- cGUUGAcaaAGCCGGUGG---------------UGCAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 8868 | 1.13 | 0.000695 |
Target: 5'- uGCAACUGUUUCGGCCACCACGUCGACa -3' miRNA: 3'- -CGUUGACAAAGCCGGUGGUGCAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 12356 | 0.66 | 0.777782 |
Target: 5'- gGCAacGCUGgUUCGGCCA---UGUCGAg -3' miRNA: 3'- -CGU--UGACaAAGCCGGUgguGCAGCUg -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 12575 | 0.67 | 0.712419 |
Target: 5'- gGCGGCUGgcgCGGUCGCUuuCuUCGGCg -3' miRNA: 3'- -CGUUGACaaaGCCGGUGGu-GcAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 12596 | 0.71 | 0.486156 |
Target: 5'- cGCAGCgc---CGGCCGCCGcCG-CGACa -3' miRNA: 3'- -CGUUGacaaaGCCGGUGGU-GCaGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 12999 | 0.72 | 0.414136 |
Target: 5'- aCGACauccUCGcCCACCACGUCGACg -3' miRNA: 3'- cGUUGacaaAGCcGGUGGUGCAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 13079 | 0.72 | 0.424025 |
Target: 5'- cGCGGCUG---CGGCgGCUgGCGUCGACg -3' miRNA: 3'- -CGUUGACaaaGCCGgUGG-UGCAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 14198 | 0.72 | 0.424025 |
Target: 5'- gGCAcgcGCggaagCGGCCGCCGCGgccgUCGACa -3' miRNA: 3'- -CGU---UGacaaaGCCGGUGGUGC----AGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 15980 | 0.69 | 0.574964 |
Target: 5'- cGCgAGCUGcgcgCGGaCGCgCACGUCGGCg -3' miRNA: 3'- -CG-UUGACaaa-GCCgGUG-GUGCAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 17165 | 0.69 | 0.572686 |
Target: 5'- aGCGGCgcgaccaGcGCCugCGCGUCGGCa -3' miRNA: 3'- -CGUUGacaaag-C-CGGugGUGCAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 18330 | 0.68 | 0.66693 |
Target: 5'- gGCgAGCUGaccgCGGCCGCguCGCGUCG-Ca -3' miRNA: 3'- -CG-UUGACaaa-GCCGGUG--GUGCAGCuG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 18972 | 0.67 | 0.701144 |
Target: 5'- cCGAUcGUcaUCGGCCAuCCGCG-CGACa -3' miRNA: 3'- cGUUGaCAa-AGCCGGU-GGUGCaGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 19982 | 0.69 | 0.563594 |
Target: 5'- -----cGUUcgCGGCCGCCGCGuaaUCGACc -3' miRNA: 3'- cguugaCAAa-GCCGGUGGUGC---AGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 20388 | 0.69 | 0.609347 |
Target: 5'- cGCAACUGgaucgcUUCGGUCGCUgucuggACGgCGGCu -3' miRNA: 3'- -CGUUGACa-----AAGCCGGUGG------UGCaGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 21566 | 0.77 | 0.222141 |
Target: 5'- aGCGGCagGUUguagCGGCCGCgcaagugCGCGUCGACg -3' miRNA: 3'- -CGUUGa-CAAa---GCCGGUG-------GUGCAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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