miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27573 5' -52.3 NC_005882.1 + 31226 0.66 0.788173
Target:  5'- gGCAagacGCUGUaucCGGCgCAggucgaacgcguCCugGUCGACa -3'
miRNA:   3'- -CGU----UGACAaa-GCCG-GU------------GGugCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 29860 0.67 0.689796
Target:  5'- gGCGACacgaagcUGGCCGCCgguGCGUCGAUc -3'
miRNA:   3'- -CGUUGacaaa--GCCGGUGG---UGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 18972 0.67 0.701144
Target:  5'- cCGAUcGUcaUCGGCCAuCCGCG-CGACa -3'
miRNA:   3'- cGUUGaCAa-AGCCGGU-GGUGCaGCUG- -5'
27573 5' -52.3 NC_005882.1 + 31611 0.67 0.701144
Target:  5'- gGCAAC----UCGGCuCGCU-CGUCGACg -3'
miRNA:   3'- -CGUUGacaaAGCCG-GUGGuGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 12575 0.67 0.712419
Target:  5'- gGCGGCUGgcgCGGUCGCUuuCuUCGGCg -3'
miRNA:   3'- -CGUUGACaaaGCCGGUGGu-GcAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 27600 0.66 0.756517
Target:  5'- gGCGACgcagGccgCGGCCGCgGCGUCccuGCa -3'
miRNA:   3'- -CGUUGa---CaaaGCCGGUGgUGCAGc--UG- -5'
27573 5' -52.3 NC_005882.1 + 23425 0.66 0.760818
Target:  5'- aGCAGCUcGUcggcgucacgggcgUCGaGCgGCCGCuGUCGGCg -3'
miRNA:   3'- -CGUUGA-CAa-------------AGC-CGgUGGUG-CAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 29958 0.66 0.767226
Target:  5'- cGCGGCgg---CGGCUACCAaaccgaaGUCGAg -3'
miRNA:   3'- -CGUUGacaaaGCCGGUGGUg------CAGCUg -5'
27573 5' -52.3 NC_005882.1 + 12356 0.66 0.777782
Target:  5'- gGCAacGCUGgUUCGGCCA---UGUCGAg -3'
miRNA:   3'- -CGU--UGACaAAGCCGGUgguGCAGCUg -5'
27573 5' -52.3 NC_005882.1 + 25389 0.68 0.678388
Target:  5'- cGCAcgacGCUGaauggccUCGGCCGCguCGcCGACg -3'
miRNA:   3'- -CGU----UGACaa-----AGCCGGUGguGCaGCUG- -5'
27573 5' -52.3 NC_005882.1 + 18330 0.68 0.66693
Target:  5'- gGCgAGCUGaccgCGGCCGCguCGCGUCG-Ca -3'
miRNA:   3'- -CG-UUGACaaa-GCCGGUG--GUGCAGCuG- -5'
27573 5' -52.3 NC_005882.1 + 1512 0.68 0.663486
Target:  5'- uGCGAUUGcUUUCGuguccuggucgaucGCCGCaCGgGUCGACg -3'
miRNA:   3'- -CGUUGAC-AAAGC--------------CGGUG-GUgCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 12999 0.72 0.414136
Target:  5'- aCGACauccUCGcCCACCACGUCGACg -3'
miRNA:   3'- cGUUGacaaAGCcGGUGGUGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 14198 0.72 0.424025
Target:  5'- gGCAcgcGCggaagCGGCCGCCGCGgccgUCGACa -3'
miRNA:   3'- -CGU---UGacaaaGCCGGUGGUGC----AGCUG- -5'
27573 5' -52.3 NC_005882.1 + 3554 0.71 0.486156
Target:  5'- aGCAGCgacaccGUUUCGGCacgAUCGCGUCG-Cg -3'
miRNA:   3'- -CGUUGa-----CAAAGCCGg--UGGUGCAGCuG- -5'
27573 5' -52.3 NC_005882.1 + 15980 0.69 0.574964
Target:  5'- cGCgAGCUGcgcgCGGaCGCgCACGUCGGCg -3'
miRNA:   3'- -CG-UUGACaaa-GCCgGUG-GUGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 25643 0.69 0.585242
Target:  5'- cGCGACgg---CGGCUGCCACGgccgcgcccguaaUCGGCg -3'
miRNA:   3'- -CGUUGacaaaGCCGGUGGUGC-------------AGCUG- -5'
27573 5' -52.3 NC_005882.1 + 8141 0.69 0.609347
Target:  5'- uGCAugUc-UUCGGCCGUCGCGUCG-Cg -3'
miRNA:   3'- -CGUugAcaAAGCCGGUGGUGCAGCuG- -5'
27573 5' -52.3 NC_005882.1 + 31961 0.69 0.620864
Target:  5'- cCGACgagcGUcggCGGCCGCUgaccgauuACGUCGACg -3'
miRNA:   3'- cGUUGa---CAaa-GCCGGUGG--------UGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 5122 0.68 0.632393
Target:  5'- uGCGGCaGUcUCGGCauagccgaaauCGCCACGUaCGAUg -3'
miRNA:   3'- -CGUUGaCAaAGCCG-----------GUGGUGCA-GCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.