Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27575 | 3' | -55.9 | NC_005882.1 | + | 12536 | 0.73 | 0.218232 |
Target: 5'- uGUCGcGGcggcgGCCGGCGCUG-CGGCGAUCg -3' miRNA: 3'- -UAGC-CCa----CGGUUGCGGUaGCUGCUAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 13124 | 0.66 | 0.571066 |
Target: 5'- ---uGGUGUCGAUGCUcgCGACGuUCa -3' miRNA: 3'- uagcCCACGGUUGCGGuaGCUGCuAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 16008 | 0.66 | 0.537716 |
Target: 5'- -gCGGGUGCguGCGCCGccgcaaGGCGGc- -3' miRNA: 3'- uaGCCCACGguUGCGGUag----CUGCUag -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 23442 | 0.67 | 0.483773 |
Target: 5'- -aCGGGcGUCGAgcggcCGCUGUCGGCGAUg -3' miRNA: 3'- uaGCCCaCGGUU-----GCGGUAGCUGCUAg -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 16333 | 0.67 | 0.452678 |
Target: 5'- -cCuGGUGCC-GCGCCAggaggCGACGuAUCu -3' miRNA: 3'- uaGcCCACGGuUGCGGUa----GCUGC-UAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 17651 | 0.68 | 0.44659 |
Target: 5'- -gCGGGccGCU-ACGCCGagcaaauggcgaacgUCGACGAUCg -3' miRNA: 3'- uaGCCCa-CGGuUGCGGU---------------AGCUGCUAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 19830 | 0.68 | 0.407214 |
Target: 5'- -aCGGGcGCCGACaCCGUCGAguacggcgagaacguCGAUCc -3' miRNA: 3'- uaGCCCaCGGUUGcGGUAGCU---------------GCUAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 1563 | 0.69 | 0.366504 |
Target: 5'- cAUCGGGcGUCGccGCGCagcUCGACGAUUa -3' miRNA: 3'- -UAGCCCaCGGU--UGCGgu-AGCUGCUAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 32251 | 0.69 | 0.348949 |
Target: 5'- -aCGGGUGUCAGUGUCAUCc-CGAUCg -3' miRNA: 3'- uaGCCCACGGUUGCGGUAGcuGCUAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 21422 | 0.7 | 0.340398 |
Target: 5'- -aCGGcGcaCCGGCGCCGaCGACGAUCa -3' miRNA: 3'- uaGCC-CacGGUUGCGGUaGCUGCUAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 27539 | 0.71 | 0.29156 |
Target: 5'- --aGGGcGCCGcaaucggcaucggGCGCuCGUCGGCGGUCg -3' miRNA: 3'- uagCCCaCGGU-------------UGCG-GUAGCUGCUAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 27207 | 0.71 | 0.277511 |
Target: 5'- gAUCGGGauUGCCAucacCGCgAUCG-CGGUCg -3' miRNA: 3'- -UAGCCC--ACGGUu---GCGgUAGCuGCUAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 21658 | 0.68 | 0.403398 |
Target: 5'- -cCGGGaGCgCGGCGCCuuccgGUCGACGggCa -3' miRNA: 3'- uaGCCCaCG-GUUGCGG-----UAGCUGCuaG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 5324 | 0.68 | 0.403398 |
Target: 5'- uGUCGucGGUGCCgGGCGUCAuggUCGGCGAg- -3' miRNA: 3'- -UAGC--CCACGG-UUGCGGU---AGCUGCUag -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 17775 | 0.7 | 0.340398 |
Target: 5'- cUCGGGcGCguGCgGCUGUCGAgGAUCg -3' miRNA: 3'- uAGCCCaCGguUG-CGGUAGCUgCUAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 24802 | 0.7 | 0.315666 |
Target: 5'- gGUCGaGUucGCCGAUGUCuUCGACGGUCa -3' miRNA: 3'- -UAGCcCA--CGGUUGCGGuAGCUGCUAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 16880 | 0.7 | 0.307729 |
Target: 5'- -aCGGGUcGaUCGGCGCCGUCGAaguucaGGUCg -3' miRNA: 3'- uaGCCCA-C-GGUUGCGGUAGCUg-----CUAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 22970 | 0.71 | 0.299946 |
Target: 5'- -cCGGGUGauGACGCCGUUGAUcaGGUCg -3' miRNA: 3'- uaGCCCACggUUGCGGUAGCUG--CUAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 12020 | 0.71 | 0.299946 |
Target: 5'- -gCGcGGUacGCCAGCGCC-UCGGCGggCa -3' miRNA: 3'- uaGC-CCA--CGGUUGCGGuAGCUGCuaG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 31939 | 0.66 | 0.569945 |
Target: 5'- -gCGGGUagaccuggacgcuGCCuggcugAACGCCGUUGACGGa- -3' miRNA: 3'- uaGCCCA-------------CGG------UUGCGGUAGCUGCUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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