Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27575 | 3' | -55.9 | NC_005882.1 | + | 21658 | 0.68 | 0.403398 |
Target: 5'- -cCGGGaGCgCGGCGCCuuccgGUCGACGggCa -3' miRNA: 3'- uaGCCCaCG-GUUGCGG-----UAGCUGCuaG- -5' |
|||||||
27575 | 3' | -55.9 | NC_005882.1 | + | 5324 | 0.68 | 0.403398 |
Target: 5'- uGUCGucGGUGCCgGGCGUCAuggUCGGCGAg- -3' miRNA: 3'- -UAGC--CCACGG-UUGCGGU---AGCUGCUag -5' |
|||||||
27575 | 3' | -55.9 | NC_005882.1 | + | 17775 | 0.7 | 0.340398 |
Target: 5'- cUCGGGcGCguGCgGCUGUCGAgGAUCg -3' miRNA: 3'- uAGCCCaCGguUG-CGGUAGCUgCUAG- -5' |
|||||||
27575 | 3' | -55.9 | NC_005882.1 | + | 24802 | 0.7 | 0.315666 |
Target: 5'- gGUCGaGUucGCCGAUGUCuUCGACGGUCa -3' miRNA: 3'- -UAGCcCA--CGGUUGCGGuAGCUGCUAG- -5' |
|||||||
27575 | 3' | -55.9 | NC_005882.1 | + | 16880 | 0.7 | 0.307729 |
Target: 5'- -aCGGGUcGaUCGGCGCCGUCGAaguucaGGUCg -3' miRNA: 3'- uaGCCCA-C-GGUUGCGGUAGCUg-----CUAG- -5' |
|||||||
27575 | 3' | -55.9 | NC_005882.1 | + | 22970 | 0.71 | 0.299946 |
Target: 5'- -cCGGGUGauGACGCCGUUGAUcaGGUCg -3' miRNA: 3'- uaGCCCACggUUGCGGUAGCUG--CUAG- -5' |
|||||||
27575 | 3' | -55.9 | NC_005882.1 | + | 12020 | 0.71 | 0.299946 |
Target: 5'- -gCGcGGUacGCCAGCGCC-UCGGCGggCa -3' miRNA: 3'- uaGC-CCA--CGGUUGCGGuAGCUGCuaG- -5' |
|||||||
27575 | 3' | -55.9 | NC_005882.1 | + | 9475 | 1.08 | 0.000545 |
Target: 5'- cAUCGGGUGCCAACGCCAUCGACGAUCg -3' miRNA: 3'- -UAGCCCACGGUUGCGGUAGCUGCUAG- -5' |
|||||||
27575 | 3' | -55.9 | NC_005882.1 | + | 31939 | 0.66 | 0.569945 |
Target: 5'- -gCGGGUagaccuggacgcuGCCuggcugAACGCCGUUGACGGa- -3' miRNA: 3'- uaGCCCA-------------CGG------UUGCGGUAGCUGCUag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home