Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27575 | 3' | -55.9 | NC_005882.1 | + | 23830 | 0.66 | 0.548765 |
Target: 5'- -gCGGGccggaucgaaccaUGCCuugaagccgagcagcGCGCCGUCGcCGAUCa -3' miRNA: 3'- uaGCCC-------------ACGGu--------------UGCGGUAGCuGCUAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 24802 | 0.7 | 0.315666 |
Target: 5'- gGUCGaGUucGCCGAUGUCuUCGACGGUCa -3' miRNA: 3'- -UAGCcCA--CGGUUGCGGuAGCUGCUAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 26301 | 0.68 | 0.44659 |
Target: 5'- uUCuGGUaGUCGACGCCGgccuucuuguaggcgUCGAUGGUCg -3' miRNA: 3'- uAGcCCA-CGGUUGCGGU---------------AGCUGCUAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 27207 | 0.71 | 0.277511 |
Target: 5'- gAUCGGGauUGCCAucacCGCgAUCG-CGGUCg -3' miRNA: 3'- -UAGCCC--ACGGUu---GCGgUAGCuGCUAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 27539 | 0.71 | 0.29156 |
Target: 5'- --aGGGcGCCGcaaucggcaucggGCGCuCGUCGGCGGUCg -3' miRNA: 3'- uagCCCaCGGU-------------UGCG-GUAGCUGCUAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 30734 | 0.68 | 0.412982 |
Target: 5'- ---uGGUGCCAGucgcguucacguUGCCGUCGACGuUCa -3' miRNA: 3'- uagcCCACGGUU------------GCGGUAGCUGCuAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 31939 | 0.66 | 0.569945 |
Target: 5'- -gCGGGUagaccuggacgcuGCCuggcugAACGCCGUUGACGGa- -3' miRNA: 3'- uaGCCCA-------------CGG------UUGCGGUAGCUGCUag -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 32067 | 0.66 | 0.537716 |
Target: 5'- gAUCGcGUaGUCGAcCGgCGUCGGCGAUCg -3' miRNA: 3'- -UAGCcCA-CGGUU-GCgGUAGCUGCUAG- -5' |
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27575 | 3' | -55.9 | NC_005882.1 | + | 32251 | 0.69 | 0.348949 |
Target: 5'- -aCGGGUGUCAGUGUCAUCc-CGAUCg -3' miRNA: 3'- uaGCCCACGGUUGCGGUAGcuGCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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