miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27575 5' -55.8 NC_005882.1 + 12912 0.66 0.649588
Target:  5'- gCCGAUGGUGUGCccGcGACcagugCUGCCgCCg -3'
miRNA:   3'- -GGCUGCUACAUGa-C-CUGca---GGCGG-GG- -5'
27575 5' -55.8 NC_005882.1 + 17681 0.66 0.63856
Target:  5'- gUCGACGAUcggccGUACUGGAUGUaCGUggcgaUCCu -3'
miRNA:   3'- -GGCUGCUA-----CAUGACCUGCAgGCG-----GGG- -5'
27575 5' -55.8 NC_005882.1 + 13995 0.66 0.616495
Target:  5'- gCgGACGAU---CaGGACGcCCGCUCCg -3'
miRNA:   3'- -GgCUGCUAcauGaCCUGCaGGCGGGG- -5'
27575 5' -55.8 NC_005882.1 + 14820 0.67 0.566074
Target:  5'- aCGGCGucgacaacgcguucaAUGaGCUggucacGGACGUCCGUUCCg -3'
miRNA:   3'- gGCUGC---------------UACaUGA------CCUGCAGGCGGGG- -5'
27575 5' -55.8 NC_005882.1 + 3176 0.67 0.550916
Target:  5'- aCUGACGAuugccuUGccGCUGGACagugacgCCGCCCg -3'
miRNA:   3'- -GGCUGCU------ACa-UGACCUGca-----GGCGGGg -5'
27575 5' -55.8 NC_005882.1 + 24897 0.67 0.540166
Target:  5'- cUCGGCGGcUGaucGCUGGGCGcCCGCauuuCCg -3'
miRNA:   3'- -GGCUGCU-ACa--UGACCUGCaGGCGg---GG- -5'
27575 5' -55.8 NC_005882.1 + 27720 0.68 0.518887
Target:  5'- gCCGGCuaccGAUGcGCcagccGGCGaUCCGCCCCg -3'
miRNA:   3'- -GGCUG----CUACaUGac---CUGC-AGGCGGGG- -5'
27575 5' -55.8 NC_005882.1 + 23249 0.68 0.512567
Target:  5'- gCCGAucggcgcauCGAUGUacgcgaucgccccgaGCUGGACGgccaUCGCCuCCa -3'
miRNA:   3'- -GGCU---------GCUACA---------------UGACCUGCa---GGCGG-GG- -5'
27575 5' -55.8 NC_005882.1 + 12076 0.69 0.437609
Target:  5'- aCGACGAg--ACUGG-CGcaUCCauGCCCCa -3'
miRNA:   3'- gGCUGCUacaUGACCuGC--AGG--CGGGG- -5'
27575 5' -55.8 NC_005882.1 + 1583 0.69 0.427962
Target:  5'- cUCGACGAU-UACUugacGGCGUCCuucaGCCCCu -3'
miRNA:   3'- -GGCUGCUAcAUGAc---CUGCAGG----CGGGG- -5'
27575 5' -55.8 NC_005882.1 + 36596 0.69 0.427962
Target:  5'- gCUGACGAUG-ACgaaGGACGUcCCGUaCCUg -3'
miRNA:   3'- -GGCUGCUACaUGa--CCUGCA-GGCG-GGG- -5'
27575 5' -55.8 NC_005882.1 + 28346 0.7 0.418442
Target:  5'- aCCGcCGAUGUgacGCUGGA-GaCCGCCUg -3'
miRNA:   3'- -GGCuGCUACA---UGACCUgCaGGCGGGg -5'
27575 5' -55.8 NC_005882.1 + 2240 0.7 0.418442
Target:  5'- aUCGACGA-GUGCcuucgcgauUGGACGacggacgCaCGCCCCg -3'
miRNA:   3'- -GGCUGCUaCAUG---------ACCUGCa------G-GCGGGG- -5'
27575 5' -55.8 NC_005882.1 + 16139 0.71 0.338868
Target:  5'- aCCGA-GAU--GCUGGACG-CCGUCCUg -3'
miRNA:   3'- -GGCUgCUAcaUGACCUGCaGGCGGGG- -5'
27575 5' -55.8 NC_005882.1 + 31947 0.71 0.330734
Target:  5'- gUCGACGAgcggGUAgacCUGGACG-CUGCCUg -3'
miRNA:   3'- -GGCUGCUa---CAU---GACCUGCaGGCGGGg -5'
27575 5' -55.8 NC_005882.1 + 19711 0.72 0.322744
Target:  5'- gCGACGAcugcauccuUGUGCUucgGGGCGagcgugCCGCCCUu -3'
miRNA:   3'- gGCUGCU---------ACAUGA---CCUGCa-----GGCGGGG- -5'
27575 5' -55.8 NC_005882.1 + 25258 0.75 0.18694
Target:  5'- uUCGGCGAUGgACUGGAUGUUCaugagcgGCCUCg -3'
miRNA:   3'- -GGCUGCUACaUGACCUGCAGG-------CGGGG- -5'
27575 5' -55.8 NC_005882.1 + 9441 1.14 0.0003
Target:  5'- cCCGACGAUGUACUGGACGUCCGCCCCg -3'
miRNA:   3'- -GGCUGCUACAUGACCUGCAGGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.