miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27580 3' -56.9 NC_005882.1 + 1366 0.73 0.198205
Target:  5'- gCUGUUUGCUGCGCGCUuCCucGCGGCc -3'
miRNA:   3'- -GGCAAGCGACGCGUGGcGGu-CGUUGu -5'
27580 3' -56.9 NC_005882.1 + 2712 0.71 0.272793
Target:  5'- uCCGgaCGCUGCGCAUUgaagGCCAGUuucucAACGa -3'
miRNA:   3'- -GGCaaGCGACGCGUGG----CGGUCG-----UUGU- -5'
27580 3' -56.9 NC_005882.1 + 3272 0.67 0.443615
Target:  5'- uCCGacgUGCUGCGCGagcgUGCgGGCGGCGu -3'
miRNA:   3'- -GGCaa-GCGACGCGUg---GCGgUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 3375 0.67 0.453628
Target:  5'- gCGggCGCUGCGCggccugggcuACCGCguGCuGGCc -3'
miRNA:   3'- gGCaaGCGACGCG----------UGGCGguCG-UUGu -5'
27580 3' -56.9 NC_005882.1 + 3376 0.67 0.433729
Target:  5'- uCCGcgUCGaaaacccGCGUGCCGUCAgGCAGCAg -3'
miRNA:   3'- -GGCa-AGCga-----CGCGUGGCGGU-CGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 3662 0.67 0.463762
Target:  5'- gCGUcgacgCGCUGCGCACuCGgcucacgaugaCCAGCAcGCGa -3'
miRNA:   3'- gGCAa----GCGACGCGUG-GC-----------GGUCGU-UGU- -5'
27580 3' -56.9 NC_005882.1 + 5070 0.72 0.225049
Target:  5'- gCGcaUGCUGCGCuggcguaucggcguGCCGCCGGUAGCu -3'
miRNA:   3'- gGCaaGCGACGCG--------------UGGCGGUCGUUGu -5'
27580 3' -56.9 NC_005882.1 + 5926 0.66 0.494847
Target:  5'- gCCGUUCGCacGgGCAUCGgcuaCCGGCuuCAg -3'
miRNA:   3'- -GGCAAGCGa-CgCGUGGC----GGUCGuuGU- -5'
27580 3' -56.9 NC_005882.1 + 6402 0.77 0.100786
Target:  5'- gCCGgcCGC-GCGCGCUGCCugGGCGACAg -3'
miRNA:   3'- -GGCaaGCGaCGCGUGGCGG--UCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 11045 1.1 0.000354
Target:  5'- gCCGUUCGCUGCGCACCGCCAGCAACAc -3'
miRNA:   3'- -GGCAAGCGACGCGUGGCGGUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 12036 0.72 0.229301
Target:  5'- gUCGUUCGCgGCGCaaauccaccaggagaGCCGCUGGCGcGCGg -3'
miRNA:   3'- -GGCAAGCGaCGCG---------------UGGCGGUCGU-UGU- -5'
27580 3' -56.9 NC_005882.1 + 12329 0.66 0.474013
Target:  5'- gCGUgacgGCUGCcggcgGCGCCGaUCGGCAACGc -3'
miRNA:   3'- gGCAag--CGACG-----CGUGGC-GGUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 12408 0.75 0.146095
Target:  5'- gCCGaaccagCGUUGCcgaucgGCGCCGCCGGCAGCc -3'
miRNA:   3'- -GGCaa----GCGACG------CGUGGCGGUCGUUGu -5'
27580 3' -56.9 NC_005882.1 + 12605 0.72 0.226863
Target:  5'- gCCGaUCGCcgcaGCGCcgGCCGCCGccGCGACAc -3'
miRNA:   3'- -GGCaAGCGa---CGCG--UGGCGGU--CGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 12610 0.66 0.474013
Target:  5'- ----aCGCcgGUGCGCuUGCCGGCGACGc -3'
miRNA:   3'- ggcaaGCGa-CGCGUG-GCGGUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 12717 0.69 0.350893
Target:  5'- aCGcagCGCgcgGCgGCGCuCGCCGGCGACc -3'
miRNA:   3'- gGCaa-GCGa--CG-CGUG-GCGGUCGUUGu -5'
27580 3' -56.9 NC_005882.1 + 12721 0.66 0.50542
Target:  5'- aCGgcaUCGC-GCGCGCCGUCuGCGu-- -3'
miRNA:   3'- gGCa--AGCGaCGCGUGGCGGuCGUugu -5'
27580 3' -56.9 NC_005882.1 + 12859 0.67 0.433729
Target:  5'- ---cUCGCUGCGUguucACUGCCGGCu--- -3'
miRNA:   3'- ggcaAGCGACGCG----UGGCGGUCGuugu -5'
27580 3' -56.9 NC_005882.1 + 15324 0.75 0.126804
Target:  5'- gCCGUUCaucgucgaGCUGCGCaacguGCCGuuCCGGCAGCAg -3'
miRNA:   3'- -GGCAAG--------CGACGCG-----UGGC--GGUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 15822 0.68 0.386294
Target:  5'- uUCGgaCGCUGgagcgGCGCCGCC-GCGACu -3'
miRNA:   3'- -GGCaaGCGACg----CGUGGCGGuCGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.