miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27580 3' -56.9 NC_005882.1 + 20730 0.67 0.453628
Target:  5'- aCGUUcCGCUGCaGCGCgGCgGcCAACAg -3'
miRNA:   3'- gGCAA-GCGACG-CGUGgCGgUcGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 25583 0.69 0.325893
Target:  5'- gCGcggCGCcGCGCugCGUgAGCAACGc -3'
miRNA:   3'- gGCaa-GCGaCGCGugGCGgUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 12717 0.69 0.350893
Target:  5'- aCGcagCGCgcgGCgGCGCuCGCCGGCGACc -3'
miRNA:   3'- gGCaa-GCGa--CG-CGUG-GCGGUCGUUGu -5'
27580 3' -56.9 NC_005882.1 + 16008 0.68 0.395505
Target:  5'- gCGggUGC-GUGCGCCGCCgcaaGGCGGCc -3'
miRNA:   3'- gGCaaGCGaCGCGUGGCGG----UCGUUGu -5'
27580 3' -56.9 NC_005882.1 + 27025 0.68 0.414346
Target:  5'- gUCGUUgGCcGCGCGCUGCUcccuuucgGGCAggGCAu -3'
miRNA:   3'- -GGCAAgCGaCGCGUGGCGG--------UCGU--UGU- -5'
27580 3' -56.9 NC_005882.1 + 3376 0.67 0.433729
Target:  5'- uCCGcgUCGaaaacccGCGUGCCGUCAgGCAGCAg -3'
miRNA:   3'- -GGCa-AGCga-----CGCGUGGCGGU-CGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 12859 0.67 0.433729
Target:  5'- ---cUCGCUGCGUguucACUGCCGGCu--- -3'
miRNA:   3'- ggcaAGCGACGCG----UGGCGGUCGuugu -5'
27580 3' -56.9 NC_005882.1 + 23543 0.67 0.443615
Target:  5'- cUCGggC-CUGCGCcuguggggcaACCGCaCGGCGGCAu -3'
miRNA:   3'- -GGCaaGcGACGCG----------UGGCG-GUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 26562 0.67 0.443615
Target:  5'- aCGUgCGCcGCGCGgaGCUGGCGACc -3'
miRNA:   3'- gGCAaGCGaCGCGUggCGGUCGUUGu -5'
27580 3' -56.9 NC_005882.1 + 23632 0.7 0.279932
Target:  5'- aCGUcaucaacgaaUCGCUGCGCuACUucaGCCAGCAGu- -3'
miRNA:   3'- gGCA----------AGCGACGCG-UGG---CGGUCGUUgu -5'
27580 3' -56.9 NC_005882.1 + 2712 0.71 0.272793
Target:  5'- uCCGgaCGCUGCGCAUUgaagGCCAGUuucucAACGa -3'
miRNA:   3'- -GGCaaGCGACGCGUGG----CGGUCG-----UUGU- -5'
27580 3' -56.9 NC_005882.1 + 32747 0.71 0.258953
Target:  5'- aCGUUgGCUGCGUuCgCGCCGGCucgauGCGu -3'
miRNA:   3'- gGCAAgCGACGCGuG-GCGGUCGu----UGU- -5'
27580 3' -56.9 NC_005882.1 + 15324 0.75 0.126804
Target:  5'- gCCGUUCaucgucgaGCUGCGCaacguGCCGuuCCGGCAGCAg -3'
miRNA:   3'- -GGCAAG--------CGACGCG-----UGGC--GGUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 27567 0.74 0.154537
Target:  5'- gUCGgcggUCGCcGCGCgcgcgGCCGCCGGCAugGc -3'
miRNA:   3'- -GGCa---AGCGaCGCG-----UGGCGGUCGUugU- -5'
27580 3' -56.9 NC_005882.1 + 32202 0.73 0.187654
Target:  5'- gCCGggacUCGCacUGCGCgugcugACCGCCAGCGAa- -3'
miRNA:   3'- -GGCa---AGCG--ACGCG------UGGCGGUCGUUgu -5'
27580 3' -56.9 NC_005882.1 + 21995 0.73 0.198205
Target:  5'- gCCG-UCGCgaucGUGCugCGCCAGCucAACGg -3'
miRNA:   3'- -GGCaAGCGa---CGCGugGCGGUCG--UUGU- -5'
27580 3' -56.9 NC_005882.1 + 19180 0.72 0.220271
Target:  5'- uCCGUcacgucggguuccUCGgUGCGCAgCCGCCGGCccuCAa -3'
miRNA:   3'- -GGCA-------------AGCgACGCGU-GGCGGUCGuu-GU- -5'
27580 3' -56.9 NC_005882.1 + 5070 0.72 0.225049
Target:  5'- gCGcaUGCUGCGCuggcguaucggcguGCCGCCGGUAGCu -3'
miRNA:   3'- gGCaaGCGACGCG--------------UGGCGGUCGUUGu -5'
27580 3' -56.9 NC_005882.1 + 12036 0.72 0.229301
Target:  5'- gUCGUUCGCgGCGCaaauccaccaggagaGCCGCUGGCGcGCGg -3'
miRNA:   3'- -GGCAAGCGaCGCG---------------UGGCGGUCGU-UGU- -5'
27580 3' -56.9 NC_005882.1 + 18134 0.72 0.233
Target:  5'- cUCGg-CGCUGCGCACgCGCUugcuGCAGCu -3'
miRNA:   3'- -GGCaaGCGACGCGUG-GCGGu---CGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.